Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02093 atgggGTTGAACTcaacaaaatatgataaacCCAAAGTTGAAAACCTAAGTTTGCATCATCACATGATCAATTATGTTTCAAGAGGTTTATATATTCGTAACTTGGTATCTAAGCAACGGAGGAGATTGCTCATTGCTGGTTATGATCTTGACATGTCGTATATCACAGATCGAATTTTAGCAATGTCATTTCCTGCAGAGCGTATGCGAGCAATGTATAGAAATCCTCTCTGGCAGGTCAAATCTGTGTTGGATTTGAGACATTATGAGCATTATAAGatCTATAATCTGTgtatagaagaaaattatgatcCAACAAACTTTCATGGTCGTGTGGAATCATATCCTTTTGATGACAACCATGTGCCATCTCTTGAAATGATCAAGACTTTCTGTAGAAGTGTGGATTCATGGCTATCAAGTGACCCAAAAAATATTGCAGTTATACATTGCATGGCAGGGAAGGGTAGAACTGGCTTAATGGTATGTGCCTACCTAGTTTACTGCAACATGTCAGCAGAGGAAGCTCTTCAATTGTATGCAGAGAGACGGACAACCAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTATGTGAGGTACTGGGAAAGTGTGCTTTCATTTCCTAGGGGCACTGGTACGGGACCACCAGATGTGAACTTGCCTAAAAAATGTAGCAGAGAATTGAGGCGAATCCGGCTTTATGACACAGTTAACATTGACAGAATCTTCTTCGTGGTCTCAGAGCTGCAGGAGGTTCCTGGTCAGGTCTACCAACCTCCGGTGGAAGTTTACAGGAGCTGTTGCCGAAAGATTAAGAAGGGTTATCAGAGACCTACCAGTCCTCGTTATTATATCTCTTTtgttgaagatgatgaagatggaGAGAAATTAGAATTAGTAGAACCTCATGTTGTAGTACAAATGGACACTGAAAGTCCCGTAATCTACCAAAAATCCTGTCTAGACCATTATTTTGACAAACCTTTACAAGTTACTGGCGATGTGCGTGTCATATTCTATGAGAAAATGATAGGAGGGCGTCTTTTCTACTGTTGTTTTAATACGGCTTTTATTAGGAACAGCTTACTACAGCTCACCGTGTGGGAATTGGATAAAGTAGGGAAGAAAGGAAGATCAATATGCGGCCCTTCCTTCTGCTTAGAATTGCTGTTTGGCCCTGCAAACAATACAAAACATTCATTTACAGCTCCACCAAATGGTgtgaattttattgatgattcaTTCTG 1253 0.3807 MGLNSTKYDKPKVENLSLHHHMINYVSRGLYIRNLVSKQRRRLLIAGYDLDMSYITDRILAMSFPAERMRAMYRNPLWQVKSVLDLRHYEHYKIYNLCIEENYDPTNFHGRVESYPFDDNHVPSLEMIKTFCRSVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLVYCNMSAEEALQLYAERRTTNNEGVSIPSQRRYVRYWESVLSFPRGTGTGPPDVNLPKKCSRELRRIRLYDTVNIDRIFFVVSELQEVPGQVYQPPVEVYRSCCRKIKKGYQRPTSPRYYISFVEDDEDGEKLELVEPHVVVQMDTESPVIYQKSCLDHYFDKPLQVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTVWELDKVGKKGRSICGPSFCLELLFGPANNTKHSFTAPPNGVNFIDDSF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02093 417 CDD PTP_PTEN 51 204 IPR045101 GO:0016791
Bva03g02093 417 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311|GO:0016791
Bva03g02093 417 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 300 395 IPR035892 -
Bva03g02093 417 ProSiteProfiles C2 tensin-type domain profile. 241 396 IPR014020 -
Bva03g02093 417 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Bva03g02093 417 Pfam C2 domain of PTEN tumour-suppressor protein 319 393 IPR014020 -
Bva03g02093 417 PANTHER BNAC03G16750D PROTEIN 1 398 - -
Bva03g02093 417 SMART PTEN_C2_2 223 395 IPR014020 -
Bva03g02093 417 Pfam Tyrosine phosphatase family 143 185 IPR026893 GO:0004721
Bva03g02093 417 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 398 - -
Bva03g02093 417 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Bva03g02093 417 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Bva03g02093 417 Gene3D Protein tyrosine phosphatase superfamily 29 209 IPR029021 -
Bva03g02093 417 SMART ptp_7 106 253 IPR003595 -
Bva03g02093 417 Gene3D - 286 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02093 Bva-Chr3 18488205 18494428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02093 21 396 Protein tyrosine phosphatase (PTP) family AT5G39400 70.635 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02093 K01110 - gmx:100809938 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02093 03 18488205 18494428 Bva03g02093 03 18488205 18494428 ECH