Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02077 ATGtgtaagaagaaaatggcTTGTTATAAGATTGAGGATTTCACTGTTTTAGTTGTTGATAATGATCATCCCACACTGTCCATCGTTGCTAGCCAACTCAGATCATGGGCATACAAAGTGGTCACTGTGGACAACGGGTGTGATGCCATGGCAGCGATAAGGAGGTATCGAAAGTACATTGATCTGGTTATCACCAACCTTCACATGCCAGGAATGGATGGGCTTGAACTGCAACAACTCATCAAAAACGAATTCAAGCTACCTGTGATAATCATGTCTGAAGACAAGAGAAAGAGTATCATCACCAAGTGTTTGGGGAATGGAGCAACATTTTTTCTGGCGAAGCCTGTATCTGCTGCTGATGTTAAAGACGTGTGGCAATACGCAGTGGCTGCTaaggaaggaagagaaattgagGTTCTTAATTCTGCTGGCTCATCAACTGGCTCAAAGAAAACTCCTGAGGATATTGGTTCTAGCTCTAGATCTAGTTCTGATTCATTATCATCTGAGATTGAgcctaaagaaaaaagagagaaagacaagagaaaaaaatttaagatgacGAAGGAATGCGAAGAAAGGCCTCCTGCTCCAAAGAAGACCAAGGTTAATTGGACAGCTTATCTTGAGAATCTCTTCTTGATGGCCATAACACATATTGGACTAGATAAGGCTGTTCCTAAGAAGATTCTTGAGTTCATGGCTGTGCCTGACTTGACTAGAGAAAATGTTGCCAGCCATTTGCAGaAATACCGCAACTTCCTTAAGAAAGTTTCTACCCTAGGATCTCTTGGGGGCATATCAGAAAGGACCTTGAAATCAAAGTTTGCAGCTACACTTCCTCCTGAAGTGATCAACGACCTGCGACAGAGGCTTGAACAAAGTAAAAGATTATCAGTAGCTCAAAAATCAGCAGTTTATggtactctttttccttccaaTACAGCAATCCATCTTCAAGCTCCCAACAACAGCTCTATGCCTCAATTCTTAAGTACCCAAATGCCCAGTTCTTCATACAGAGCCCTGAACCTTGGAAACCAGCAGCAATTTCCAACTCAAGCTATGTCGTTGAACCAAGTCCCATTTGGTGGGCAATCCCTACTTGGGAGCAACCCTACTTGTAATTACCCTAGTGCCCCCCTTTACCAACCAAATTACCTGTACAATGATGGTTCAAGATTTTCTGCATATGGATCAGTTAATTCTGCAAATAATGGGGTCATGGGTGGTAACTATGGTATGAAATATAGTTCCCCAatctataataataactattgTTCCCTGGGAAATCAGAATGGAAGCTTCACCCTTGCTCCAAGCACTGGGAACCAGCTGGGATCTTTTGGTTTCAACCCTAGTCCTCCATTGACCACTGATTATTTCCCCACCAATCACAGTAATTACTCTGGAATTCAATTGAATGGTAGTGAATCCATTAATCCAGTTAGAATGGTTCGAGTAGGGTTTAGTACTATCACTTCTGCTTATGGGATTGACTGTGCAGGTGCGCTTTGGCCAGAATTTGCTGTGGATGCAACTCATCAACTTAGTGGCCGTGGAAATGCTGGACATGAGTCTCATTCTACTCCAAATCCTGCCAGCCAGCTCCAGCCGGATCAACTCCAGGATGATCTTGATGAACTTCTCCTCAACTTTGACAATTTTCTTAATGAGcCACAGGTTGGAGAATCAGAAGAACTTGATCCTAGCTTATTTGATTTCTCCAATCAGAATGTGGAGGATCCTCAAGGACTTGCAAATATAATTGCTTCTACAAGTGAAAGCAACATGGTACAACAAAATGAGCTACCAACTCCTGCTAACGAAGTCTTCAACCATGTTCAAGATAGCCATGGACTTGAGGAATTGGATCCTGTTAAAATGTACATGGTGGAGGATGCCGCTGCTTCAACAGCGAATAACTCAGCTTTTTATCAGGATTGGGATGTAGATCTTGTTGAAGCAGTGTTCGGTGCTAATAACTCTAGTTG 1997 0.4026 MCKKKMACYKIEDFTVLVVDNDHPTLSIVASQLRSWAYKVVTVDNGCDAMAAIRRYRKYIDLVITNLHMPGMDGLELQQLIKNEFKLPVIIMSEDKRKSIITKCLGNGATFFLAKPVSAADVKDVWQYAVAAKEGREIEVLNSAGSSTGSKKTPEDIGSSSRSSSDSLSSEIEPKEKREKDKRKKFKMTKECEERPPAPKKTKVNWTAYLENLFLMAITHIGLDKAVPKKILEFMAVPDLTRENVASHLQKYRNFLKKVSTLGSLGGISERTLKSKFAATLPPEVINDLRQRLEQSKRLSVAQKSAVYGTLFPSNTAIHLQAPNNSSMPQFLSTQMPSSSYRALNLGNQQQFPTQAMSLNQVPFGGQSLLGSNPTCNYPSAPLYQPNYLYNDGSRFSAYGSVNSANNGVMGGNYGMKYSSPIYNNNYCSLGNQNGSFTLAPSTGNQLGSFGFNPSPPLTTDYFPTNHSNYSGIQLNGSESINPVRMVRVGFSTITSAYGIDCAGALWPEFAVDATHQLSGRGNAGHESHSTPNPASQLQPDQLQDDLDELLLNFDNFLNEVGESEELDPSLFDFSNQNVEDPQGLANIIASTSESNMVQQNELPTPANEVFNHVQDSHGLEELDPVKMYMVEDAAASTANNSAFYQDWDVDLVEAVFGANNSS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02077 663 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 257 IPR017930 -
Bva03g02077 663 Gene3D - 198 260 - -
Bva03g02077 663 CDD REC_typeB_ARR-like 16 130 - -
Bva03g02077 663 PANTHER RESPONSE REGULATOR 23-RELATED 15 573 - -
Bva03g02077 663 SMART REC_2 14 126 IPR001789 GO:0000160
Bva03g02077 663 SUPERFAMILY Homeodomain-like 199 258 IPR009057 -
Bva03g02077 663 MobiDBLite consensus disorder prediction 521 540 - -
Bva03g02077 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 573 IPR045279 GO:0009736
Bva03g02077 663 MobiDBLite consensus disorder prediction 142 200 - -
Bva03g02077 663 MobiDBLite consensus disorder prediction 142 168 - -
Bva03g02077 663 Pfam Response regulator receiver domain 16 123 IPR001789 GO:0000160
Bva03g02077 663 MobiDBLite consensus disorder prediction 519 540 - -
Bva03g02077 663 Gene3D - 15 194 - -
Bva03g02077 663 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 255 IPR006447 GO:0003677
Bva03g02077 663 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Bva03g02077 663 SUPERFAMILY CheY-like 13 131 IPR011006 -
Bva03g02077 663 MobiDBLite consensus disorder prediction 169 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02077 Bva-Chr3 18372288 18377310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02077 16 280 Response Regulator Gene Family AT5G07210 38.462 2.85e-52 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva03g02077 Response_reg 1.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02077 - K14491 aprc:113866677 280.796