Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02053 ATGGCATTCCTCAATAAAGTGGGGAACCTACTCAAGCATTCCTCTGTCAAGTACATTAATCAAGAATTATCTGGGTCTACCCCATCAATTTACCATGCAATCAGATCCATGTCATCTTCAAAACTTTTTGTTGGAGGTATTTCATATAGCACAGATGATGCAAGTCTGAGAGATGCCTTTGCTCGCTATGGGGAGGTGGTTGATGCAAGGGTTATTTTGGATCGCGAGACTGGTAGGTCCAGAGGATTTGGCTTCATTACTTACACATCAACTGAGGACGCTTCCAGTGCCATTCAGGGGATGGATGGGcagGATCTTCATGGTCGGACGATCAGGGTGAATTATGCTACAGAAAGGTCCCGTCCAGGGTTTGGTGGCGGctatggtggtggtggtggttaTGGGGGTGGCGGCTATGGCGGTGGCGGTGGTTACGGGGGTGGTGGCTATGGTCGGAGTAATTATGGTGGTGGTGATAACTATGGTAATGCAAGTTACGGTGGTGGGGGCAGCTATGGCGGTAGCAGCTTGAACTCCAGTGGTAGTGCCGGAGGAGACTATGGTGCTTCTGCTGGTGCTGGTGATGAAAATTCTGGTGGATTCGCTAGCAGTGAATTCAATAGCAATTCTGGTTTGGGACCTGAAGATGATGGCCAGTTTGGTAGCAAGCAAAATGACGAAATGGGCACATATGATGATGATCAGAACCTGACACAAGAACAATTTGAAGGAAAACAACGATG 743 0.4643 MAFLNKVGNLLKHSSVKYINQELSGSTPSIYHAIRSMSSSKLFVGGISYSTDDASLRDAFARYGEVVDARVILDRETGRSRGFGFITYTSTEDASSAIQGMDGQDLHGRTIRVNYATERSRPGFGGGYGGGGGYGGGGYGGGGGYGGGGYGRSNYGGGDNYGNASYGGGGSYGGSSLNSSGSAGGDYGASAGAGDENSGGFASSEFNSNSGLGPEDDGQFGSKQNDEMGTYDDDQNLTQEQFEGKQR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02053 247 MobiDBLite consensus disorder prediction 179 247 - -
Bva03g02053 247 SMART rrm1_1 41 114 IPR000504 GO:0003723
Bva03g02053 247 MobiDBLite consensus disorder prediction 200 215 - -
Bva03g02053 247 Gene3D - 13 135 IPR012677 -
Bva03g02053 247 PRINTS Eggshell protein signature 36 52 - -
Bva03g02053 247 PRINTS Eggshell protein signature 135 150 - -
Bva03g02053 247 PRINTS Eggshell protein signature 161 171 - -
Bva03g02053 247 PRINTS Eggshell protein signature 188 206 - -
Bva03g02053 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Bva03g02053 247 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 229 - -
Bva03g02053 247 MobiDBLite consensus disorder prediction 223 237 - -
Bva03g02053 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Bva03g02053 247 SUPERFAMILY RNA-binding domain, RBD 28 149 IPR035979 GO:0003676
Bva03g02053 247 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02053 Bva-Chr3 18266919 18269953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02053 40 120 Eukaryotic Initiation Factors Gene Family AT4G34110 32.099 5.63e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02053 K12741 - gmx:100807155 206.068