Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01970 ATGGTAGCTATAATGGGTTTGGAAGAAACAATCAAAGGATTGAAGAAAGGACCTTGGACACATGAAGAGGATAAGTTGCTTAGTGAATATGTCAGCTTTCATGGGAATTGCAGTTGGAGTTCAATAGCAAGGTTTGCAGGCTTAAATAGGAGTGGCAAAAGTTGTAGGTTAAGATGGGTGAACTATTTGAAGCCTGGCCTCAAGAGAGGTAAAATAACACCGCAAGAAGAAGGCATCATTTGTGAACTGCATGCTTTACTGGGTAACAAGTGGTCTACAATAGCTAAATACTTGCCGGGAAGAACAGACAATGAGATTAAAAACTATTGGAGGACAAACTTcaagaacaaagagaaaaacccTAATTCTAAGAAGTCAGAAAAGCGAAGAGCACGGAGCCTAAAACAGATGAAACAAGAGCAAAAACAGGAGAAGCAACTTCTTGAAGGCAACATGATCAAAAACACCTTATCAGAGACAGAAAGCAAAACTGAGACAAAACAAACTGaagcacaagaaaagaagcaagAGATGGCTTCCATGTGCCCATCTGTAGAGGATCAATGCTTGCCTTTGATAATGTTTCAAGAAATTACTTCTTCCTGGTCTGACATAATGGGATATGAAGGCATTGATTTGGTTAACCTTTGGGACCTTGACGAACAACCACACGGTCATAATGCAGATAATTTAAACCAGTTCAGCAACTATGCTATGCTAAACCAAGCTACATTTGAAGGGGATACTATTACCGCACAGGATCAAGATAGAACTTTTTGTCTTGACGAAGATAACCTTTGCTATGAAAAGTATATGTTTGGCTG 824 0.3738 MVAIMGLEETIKGLKKGPWTHEEDKLLSEYVSFHGNCSWSSIARFAGLNRSGKSCRLRWVNYLKPGLKRGKITPQEEGIICELHALLGNKWSTIAKYLPGRTDNEIKNYWRTNFKNKEKNPNSKKSEKRRARSLKQMKQEQKQEKQLLEGNMIKNTLSETESKTETKQTEAQEKKQEMASMCPSVEDQCLPLIMFQEITSSWSDIMGYEGIDLVNLWDLDEQPHGHNADNLNQFSNYAMLNQATFEGDTITAQDQDRTFCLDEDNLCYEKYMFG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01970 274 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva03g01970 274 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Bva03g01970 274 PANTHER MYB TRANSCRIPTION FACTOR 10 232 - -
Bva03g01970 274 MobiDBLite consensus disorder prediction 113 147 - -
Bva03g01970 274 CDD SANT 73 114 IPR001005 -
Bva03g01970 274 MobiDBLite consensus disorder prediction 160 174 - -
Bva03g01970 274 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Bva03g01970 274 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Bva03g01970 274 MobiDBLite consensus disorder prediction 113 180 - -
Bva03g01970 274 Gene3D - 7 68 - -
Bva03g01970 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Bva03g01970 274 SMART sant 68 116 IPR001005 -
Bva03g01970 274 SMART sant 15 65 IPR001005 -
Bva03g01970 274 CDD SANT 18 63 IPR001005 -
Bva03g01970 274 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Bva03g01970 274 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Bva03g01970 274 Coils Coil 124 151 - -
Bva03g01970 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Bva03g01970 274 Gene3D - 73 149 - -
Bva03g01970 274 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01970 Bva-Chr3 17711993 17713466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01970 13 224 MYB Transcription Factor Family AT3G30210 50.935 1.70e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva03g01970 Myb_DNA-binding 2.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01970 03 17711993 17713466 Bva03g01970 03 17711993 17713466 ECH