LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva03g01967	ATGGGCGTCGAAAATTACCATGTCATCGAGCTTGTCGGTGAAGGTTCGTTTGGGAAGGTGTACAAGGGCAGGCGAAAGTATACTGGAAAGACTGTTGCAATGAAATTCATAATGAAACATGGGAAAAGCGAGAAAGACATTCATAATTTACGACAAGAAATCGAgATCTTAAGAAAGCTGAagcatgaaaatattattcaaatgcTCGACTCCTTTGAAAGCCCACAAGAGTTTTGTGTTGTCACAGAATTTGCACAAGGTGAACTATTTGAGATTCTTGAGGACGATAAGTGCCTTCCTGAAGAACAAGTTCAAGCAATAGCAAAGCAATTGGTGAAAGCCTTACATTACTTGCATTCCAACCGTATTATCCATCGTGACATGAAACCACAGAATATTCTCATTGGCGCTGGATCTGTTGTTAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCCACAAATACTGTTGTTTTGCGATCCATAAAAGGAACTCCATTGTACATGGCTCCAGAACTTGTACGTGAACAACCTTACACTCATACTGTGGATTTATGGTCTCTTGGTGTTATACTGTACGAATTATTTGTTGGCCAACCTCCATTTTATACAAATTCTGTATATGCTCTCATAAGACACATTGTTAAGGATCCTGTCAAATATCCTGATAACATGTCTCCACATTTCAAAAGCTTTCTAAAGGGTTTGCTTAACAAGGCACCAGAAAGTCGACTGACTTGGCCTGCTCTCCTTGAGCACCCGTTCGTTAAAGAAACAACAGATGAATTGGAGCGCAGGGAAATGCGCGAGATATCTGGTTTACCGGTTGGCTTGGAGGCAGCATACAGAGGTGAGGGGAAAAACATTCAAACTAAAACATCTCAAGCTGCTTCTAGTCCTGAAAGCAACTCTACGGCTGCTACTGAGAATATTGCATCGCCCCTTCGGAGTGAAGCTCCGTTAAATGGTCCTAATATACATGACGATTCCCCAGaattttcaaaccaaaattGTGTGGAAGAGCCAgGCTGCCAGAGATTGGACAGACTTGAAAATAACTCCCGCACAGTGAAAGGCGCCAAAATAATTGGTCAAGATAATGAAGCATTGGCACATATTCTGCTACCACTCAAAAGATGGTCAAAACGATCTCAGAATCTTTCCAGTGATCAGGATGTTCTTGATTCAAATCAGTCATTGAGAATTCTCTCAAACCTAGTTGCAGCAGGCGCCCTCAATTCTAGTGGACGACTAGATGAACTAATAACTGAGCTTTTTGCATTTATTGGAAATGTTATAAGCTTGAAATCATCTGCAGTTATTGACTTGATGGCAAAGaCTTTCTTTATCACTAAAATGTTGCTAGATAATGGTGGGAGTAGTACTGCAAGCTCTTATTTCAGTCACTGGGTTGTACTTGTTGAAATCTATTCACAGGTCGTTACTTCGGCTAATGAGGCATCAGGAAAAGTCCTCAATGAGTGTAGTGCATGCATTGCGGTCATGTTGTCTAGAACTGCTCTGGTGCTTGGATCATCTTCTGAAACTTCTGGCCCGGAGAtgcaaaatgaaacaataaaaaaaattttggatcATGCTAAAACATCTGGTTTAGTGGACCATTTGTGTCTCTGTCTAGCAACTTCAGGCTCTAGTCTTATTTCAGGTTCTTCAAATATGCTGCGGGCTGCCTCTGAAGCATGTAGAGCTATTTGGTCCTTGATAAATGCACTGGATATCCTTTTCATGAAAACAAATCCCATCTTATTTCCCTTAAATGCCTTTTGGAGTCATTCTTTGCTTCGTCTGGATATTGCGGATCATGAGCGAGGTCCATTGTTTGGAGCTGAGTCGGCAAAAGTTATTGACGCAGTGACAAGAGCATTCCTGAGATCCAAAGCTGTTCAGGTTTCacttttctattgttttcacCAACGTCTTGAGGCTGCGACAACTGCAGGTATTCAGCTTTTGACAAGGTTCTGCCTACATAATGGAATTGTTCCAGCTCTTCTTTGTGGTCTTCCGAGTTCTCTTCCTGTTACTACTGTTGTTAGTGGTGGTGGTGATGGCACCATTGTTTCAGAGATATTCTCCATTTTGTCATTATGCAAAGATATACAAAGTGGAGAACCAAGTAAAGCGAAGTGCAAACTAAATAATCCATCTGTTCTTGTTCTCCATTCATGCCTCATTCTTGCAGTAGTTGCACAATGTTTGAAGTCAGCTGGAAGAAATTCATCCATGTTTATGCTCACAAAGTCACAAAAAATGCAGCTTGCTCGACTTTCGGTGATTGCCCATCATATTTCTTCTGAGGATAGAACTAATACTTCTTTCCAACCTCAACGTGCATCAGCCATGCTGGCCTTGGCATCTATTCTATCCCTTGAATCTGGGTCTTCTGTTCAGTCTTCAATATCTGAAATTGCAATGCCTTTGATTCCTCGAACTGCTACATTATGTGATCATCTTAAATATACATTTGGCagtgaaaacaaattaaatccTTGCAATCATAACGGGAAGCTCTCATATTGGCAAGGACTAAAAGATGGATGTGTTGGCCTTTTAGAATCCAGGCTCAAATGGGGAGGACCATTAGCTGTTCAACAGTTGTGTGCAAGTGGCGttcctcttcttcttattGAATTATTAGGCAACGATGGTTCTAATGCTTCTCGTGGAACAGAATTCACAGATGATAGAGTTGGATTATCTCCTGTTGGCATTGTTTGGACAGTATCTTCAATATGTCACTGTCTTTCCAGTGGAGCTTCAACTTTTCGtcagattttaattaaaaatgaacatGTCAAACTCTTGTGCGACTTGATAAGTGGTGTTCACCTGAAGTTGGTGAACCGCTGGATTGGGCCTGGTGGAGGGAAAACAGGAGTTAGAGATCTGATAAATGCAGTAGTAGATCTCATAGcatttccttttgttgctTTACAAAATGCTCCTGGCTTGCcatctgcttctgcttctgttaACAATGGTTTTCTTCTCAACATGGGCTCACCTGGTCAAAGAGTATGCATGGAAGACAAGAGTTTGGTTAAAgcaatagaagaagaaatggacaAATACATTAAGATCCTTCAGGATGTGGGAGTGCCTGGTACTATTCTTCGATGCTTAGATCATTTGGAGTTAAATGATTTAAGCAGGCCTGTTGCCTTTCTCGCTAAAATAATAGTCCACCGACCTTTGGCAGTTCAAATTGTGGGTAAAGGCCTTTTAGATCCAAATAGGATGAGGAGGTTGTTTGACCGTTCAAGCCCTAAAGAGGTCACGCTGGATGGGCTGATGATAGTTTCTGATCTGGCTCGAATGGACAAGGGATTCTATGAGTACATTAAAGTCGCTTCTATCTTGGAGTTTTTAAAGGATTTTCTTTCACATGAGGATCCCAATATACGTGCCAAAGCTTGCAGTGCTCTGGGAAACATGTGTCGTCACAGTGCCTACTTTTACAGCTCACTTGCAAGACATCAAATAATTGGCATCCTTATTGATCGGTGTGCTGATCCAGACAAACGAACCCGGAAATTTGCTTGCTTTGCTATTGGAAATGCGGCCTACCACAACGACATGCTATACGATGAGCTGAGAAGATCTATACctcaattatcaaatttacTGCAGATGGCTGAAGAGGACAAGACCAAAGCAAATGCTGCAGGTGCACTTAGCAACCTTGTTCGCAACTCTGACAAGCTCTGCGACGACATCGTATCCAAAGGAGCAATTCAGTCTCTGTTGAAGTTAATTTCTGATTGTTCAGTATTAGCACTGAACCCAAGCAGAAAAGATTCAGTGAGTGAGTCTCCTTTGAAGATAGCTCTCTTTTCCTTAGCAAAGATGTGTCAACACCCACCCTGCAGAGAGTTCCTGCGTTCATCAGACTTGTTTCCTGTGATTGGACGCCTTCAGCAGTCCCCAGAATCATCAATATCTCATTATGCAGCTGTAATTGTCAGTAAAGTATCTGAATCCTG	4004	0.3984	MGVENYHVIELVGEGSFGKVYKGRRKYTGKTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYTHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDNMSPHFKSFLKGLLNKAPESRLTWPALLEHPFVKETTDELERREMREISGLPVGLEAAYRGEGKNIQTKTSQAASSPESNSTAATENIASPLRSEAPLNGPNIHDDSPEFSNQNCVEEPGCQRLDRLENNSRTVKGAKIIGQDNEALAHILLPLKRWSKRSQNLSSDQDVLDSNQSLRILSNLVAAGALNSSGRLDELITELFAFIGNVISLKSSAVIDLMAKTFFITKMLLDNGGSSTASSYFSHWVVLVEIYSQVVTSANEASGKVLNECSACIAVMLSRTALVLGSSSETSGPEMQNETIKKILDHAKTSGLVDHLCLCLATSGSSLISGSSNMLRAASEACRAIWSLINALDILFMKTNPILFPLNAFWSHSLLRLDIADHERGPLFGAESAKVIDAVTRAFLRSKAVQVSLFYCFHQRLEAATTAGIQLLTRFCLHNGIVPALLCGLPSSLPVTTVVSGGGDGTIVSEIFSILSLCKDIQSGEPSKAKCKLNNPSVLVLHSCLILAVVAQCLKSAGRNSSMFMLTKSQKMQLARLSVIAHHISSEDRTNTSFQPQRASAMLALASILSLESGSSVQSSISEIAMPLIPRTATLCDHLKYTFGSENKLNPCNHNGKLSYWQGLKDGCVGLLESRLKWGGPLAVQQLCASGVPLLLIELLGNDGSNASRGTEFTDDRVGLSPVGIVWTVSSICHCLSSGASTFRQILIKNEHVKLLCDLISGVHLKLVNRWIGPGGGKTGVRDLINAVVDLIAFPFVALQNAPGLPSASASVNNGFLLNMGSPGQRVCMEDKSLVKAIEEEMDKYIKILQDVGVPGTILRCLDHLELNDLSRPVAFLAKIIVHRPLAVQIVGKGLLDPNRMRRLFDRSSPKEVTLDGLMIVSDLARMDKGFYEYIKVASILEFLKDFLSHEDPNIRAKACSALGNMCRHSAYFYSSLARHQIIGILIDRCADPDKRTRKFACFAIGNAAYHNDMLYDELRRSIPQLSNLLQMAEEDKTKANAAGALSNLVRNSDKLCDDIVSKGAIQSLLKLISDCSVLALNPSRKDSVSESPLKIALFSLAKMCQHPPCREFLRSSDLFPVIGRLQQSPESSISHYAAVIVSKVSES	1334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva03g01967	1334	SUPERFAMILY	Protein kinase-like (PK-like)	4	302	IPR011009	-
	Bva03g01967	1334	Coils	Coil	40	60	-	-
	Bva03g01967	1334	Gene3D	Transferase(Phosphotransferase) domain 1	2	316	-	-
	Bva03g01967	1334	MobiDBLite	consensus disorder prediction	288	312	-	-
	Bva03g01967	1334	PANTHER	PROTEIN KINASE RELATED	1	1333	IPR045193	GO:0004674
	Bva03g01967	1334	Pfam	Protein kinase domain	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva03g01967	1334	Pfam	HEAT repeat	1126	1155	IPR000357	GO:0005515
	Bva03g01967	1334	SMART	serkin_6	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva03g01967	1334	Coils	Coil	1202	1222	-	-
	Bva03g01967	1334	SUPERFAMILY	ARM repeat	1089	1318	IPR016024	-
	Bva03g01967	1334	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	123	135	IPR008271	GO:0004672\|GO:0006468
	Bva03g01967	1334	ProSiteProfiles	Protein kinase domain profile.	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva03g01967	1334	SMART	arm_5	1238	1292	IPR000225	GO:0005515
	Bva03g01967	1334	SMART	arm_5	1198	1237	IPR000225	GO:0005515
	Bva03g01967	1334	SMART	arm_5	1114	1154	IPR000225	GO:0005515
	Bva03g01967	1334	ProSitePatterns	Protein kinases ATP-binding region signature.	12	39	IPR017441	GO:0005524
	Bva03g01967	1334	CDD	STKc_STK36	4	256	-	-
	Bva03g01967	1334	Gene3D	-	1062	1331	IPR011989	-
	Bva03g01967	1334	MobiDBLite	consensus disorder prediction	288	339	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva03g01967	Bva-Chr3	17665158	17678202	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva03g01967	1	245	AGC Kinase Gene Family	AT3G08720	38.866	9.79e-46	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_Fused	Bva03g01967		Pkinase	1e-78	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva03g01967	K06228		-	gmx:100792102	2024.59