Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01957 ATGGCTCGGTCTGCGAAAGGCCAGCAAGAAGAATTGGAAGACGACGATGAAGGGCACCTTACAGGGAATGGCTCTTCTTCGCAGAAAGTGAAGCTAGATGAAGCGAACAAGGAGCAGAGGGTGAATACGCATCGTTCAAAGCATTCAGAAACTGAGCAACGTAGAAGGAGCAAGATAAATGAGAGGTTTCAGATTCTGAGGGATCTCATACCTCAAAATGATCAAAAAAGAGACAAGGCTTCATTTTTGTTGGAGGTTATTGAGTATATTCAGTTTTTACAGGAAAAGCTACAACTGTACGAGCAATCTTACCAAGGGTGGAATCAGGAGCCAACGAAATTAGTTCCATGGAGAAATCATCATGGTCCTTCAGAAAATATTATGGATCATCCTCAAGTTTTACAAAATGGTTCTGGTCATGAAAACAATGATGTCATTTCTTCATCGTTGCCTTCAAATGCACAAAACCCAATAGAATCTAACTTGTTGGCAACTACTCTTCAGAAGGGTTACCCCCATGGTTCAGCAAATGAAGCAATTCCCCTGACCAGGCAAATTCATTCGGACTTGTTTGACCCAGTTGTGAGTGGTGGTATGCCAACCCAACATTTGCAAGAGTCTTTATCTAATTCTGAGAACATATCTTCCCATCCTCAACATGAAGAGTGGCTTGACAGGCCAAGTGAGGGTAACTCTGCTGTTCCTGATAATTCCTTGAAGGAACATGCAGAGCTCATTGTTGATAGTGAATCCATTAGCATTTCAAATTCGTACTCCCGGGGAATATTAAATACTCTTACCCAAGTGCTGCGATCTTCGGGTGTGGACATGTCCCAGGCTAGCGTGTCAGTGCAAATTGATGTTGGGAGACGAGCAAATGCTGCCTCCACATCTAGCTCCAAGAGTCATGAAAACCAATATGTAAACAATGGAGTGATGGCATGTTCAGCAGTTGATTACTGCAATGAGGAATCTGAACAAACTCTAAAGCGGCTCAGAACAAAAGCTAGCta 1013 0.4284 MARSAKGQQEELEDDDEGHLTGNGSSSQKVKLDEANKEQRVNTHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQLYEQSYQGWNQEPTKLVPWRNHHGPSENIMDHPQVLQNGSGHENNDVISSSLPSNAQNPIESNLLATTLQKGYPHGSANEAIPLTRQIHSDLFDPVVSGGMPTQHLQESLSNSENISSHPQHEEWLDRPSEGNSAVPDNSLKEHAELIVDSESISISNSYSRGILNTLTQVLRSSGVDMSQASVSVQIDVGRRANAASTSSSKSHENQYVNNGVMACSAVDYCNEESEQTLKRLRTKAS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01957 337 CDD bHLH_AtBIM_like 42 118 - -
Bva03g01957 337 Gene3D - 40 114 IPR036638 GO:0046983
Bva03g01957 337 MobiDBLite consensus disorder prediction 199 236 - -
Bva03g01957 337 MobiDBLite consensus disorder prediction 1 57 - -
Bva03g01957 337 MobiDBLite consensus disorder prediction 31 57 - -
Bva03g01957 337 MobiDBLite consensus disorder prediction 200 217 - -
Bva03g01957 337 SMART finulus 49 99 IPR011598 GO:0046983
Bva03g01957 337 PANTHER TRANSCRIPTION FACTOR BIM3 1 335 - -
Bva03g01957 337 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Bva03g01957 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 122 IPR036638 GO:0046983
Bva03g01957 337 Coils Coil 90 110 - -
Bva03g01957 337 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 335 IPR044295 GO:0003700|GO:0006351|GO:0046983
Bva03g01957 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01957 Bva-Chr3 17582357 17587366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01957 3 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 39.365 3.30e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva03g01957 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01957 - - gmx:100791730 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01957 03 17582357 17587366 Bva03g01957 03 17582357 17587366 ECH
Bva03g01957 03 17582357 17587366 Bva04g00409 04 2425749 2428842 ECH