Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01924 atgagTCGTAATTCTGAGTCCTCCGTTGTCTTCATCGTCAGCGGCTCCGTCGAGCTTCACCGGCGTCCTCATATCAACTTCTCACTCTCAGTTGAAGGTTCAATGGCGTCAAAAAAGGAAAGCGAAAATTCAACCGATACTCCTCCATCAGCGCCAAAGACTACATACAAAGATCCAGATGACGGGCGGCAGCGATTTTTGCTTGAATTGGAATTTGTTCAGTGCCTTGCTAATCCCACCTACATCCACTATTTGGCTCAGAACCGGTATTTTGAAGATGAAGCATTCATTGGATACTTGAAGTACCTTCAATATTGGCAACGGCCTGAATACACCAAATTTATCATGTATCCACATTGCCTATTTTTTCTTGAACTTCTGCAGAATGCTAACTTTCGTAATGCAATGGCACATCCTGGCAATAAAGAACTGGCGCATAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAACAGGCTAAAACACATTTTACCGAGATCGCTTCCTGAACCACCTCCTGCTCCTGTGTCAACTCCATCACAGCCGTCCATGCCTTCTCTGCCGCCGCCAGGACCAGCTACAAATGTTGCCGGAACACCATCATCTGCACAAGCTCTTTCTCCAATGCCATACGGTATGCCCCCTGGCTCAGCTCTCGCAAAAAATGATATGAGGAATCCTGCCGTTgatagaagaaagagaaagtg 710 0.4451 MSRNSESSVVFIVSGSVELHRRPHINFSLSVEGSMASKKESENSTDTPPSAPKTTYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYTKFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPPPAPVSTPSQPSMPSLPPPGPATNVAGTPSSAQALSPMPYGMPPGSALAKNDMRNPAVDRRKRK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01924 236 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 51 153 IPR038089 -
Bva03g01924 236 MobiDBLite consensus disorder prediction 36 52 - -
Bva03g01924 236 MobiDBLite consensus disorder prediction 167 196 - -
Bva03g01924 236 MobiDBLite consensus disorder prediction 165 236 - -
Bva03g01924 236 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 35 194 IPR008831 GO:0003712|GO:0006355|GO:0016592
Bva03g01924 236 MobiDBLite consensus disorder prediction 36 59 - -
Bva03g01924 236 Pfam SOH1 64 156 IPR008831 GO:0003712|GO:0006355|GO:0016592
Bva03g01924 236 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 35 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01924 Bva-Chr3 17338343 17341649 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Bva03g01924 Med31 5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01924 K15153 - gmx:100527879 325.479