Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01917 ATGTTGAAACAAGAAGGTGGTGGGGATGGTGATGGCGGCTGCAATAACGGGCCACATATCTGTGACTCATGTCGTGCCGCGGCATGTACAGTATACTGCCGTGCCGACTCGGCATACCTCTGTGTCAGCTGCGACGGCCATATTCATGCCGCTAACCGAGTGGCTTCGCGGCATGAGCGTGTGTGGGTGTGTGAGGCGTGTGAACGTGCCCCGGCAGCATATCTATGCAGAGCTGATGCTGCTTCCCTCTGCGCCACCTGTGACGCCGACATCCACTCGGCAAATCCGCTGGCCAGCCGCCACCACCGTGTCCCAATTCTGCCAATCTCCGGCAGCCTCTATGGGCCCTCAACAACACAGGTGGGTGGCGAAGAGGAGGAAGCCATGGACGAGGAGGATGAAGATGAGGCAGCTTCATGGTTGTTGCTCAATCCTATGAAGAATAGCAACAATCCGTGTAATGGGTTTTTGTTTAATGGTGAAGTTGATGAGTATTTGGACCTTGTGGATTGCAATTCTTGTGGTGATCATATCCAGTTCACTGATCAGTATAACCAGAATCAGCAGCAACAGCATTATGGTGTTCCTCACAAGACCTATGGAGGTGATAGTGTGGTTCCTGTGCAGCAGCAGCAAGCACAGCATTTTCAGCTGGGTTTGGACTTCGAGCCCTCAAAAATGGAAGCTGCCTACAGTTACAATGCTTCCATTAGTCATAGTgTTTCCATCTCATCAATGGATGTTGGAGTTGTACCAGAAGCAACAATGAGTGATGTCTCAATTTCCCATCCAAGACCCTCAAAAGGGACAATTGACCTTTTCTCAGGGCCTCCCCTTCAGTTGCCTTGCCAACTTACACCAATGGACAGGAAGGCCAGGGTCTTAAGATAcagggagaaaaagaagacaagaaaatttgagaagacAATTAGGTATGCTTCAAGGAAAGCCTATGCAGAGACCAGACCTCGCATCAAAGGCAGATTCGCAAAGAGAACCGATGTAGAAGCAGAAGTTGATCAGATGTTCTCCACAAATCTCATGACAGAAGCTGGCTATGGAATTGTTCCCACCTTCTG 1079 0.4847 MLKQEGGGDGDGGCNNGPHICDSCRAAACTVYCRADSAYLCVSCDGHIHAANRVASRHERVWVCEACERAPAAYLCRADAASLCATCDADIHSANPLASRHHRVPILPISGSLYGPSTTQVGGEEEEAMDEEDEDEAASWLLLNPMKNSNNPCNGFLFNGEVDEYLDLVDCNSCGDHIQFTDQYNQNQQQQHYGVPHKTYGGDSVVPVQQQQAQHFQLGLDFEPSKMEAAYSYNASISHSVSISSMDVGVVPEATMSDVSISHPRPSKGTIDLFSGPPLQLPCQLTPMDRKARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTNLMTEAGYGIVPTF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01917 359 CDD Bbox1_BBX-like 20 63 - -
Bva03g01917 359 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Bva03g01917 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 17 359 IPR045281 GO:0009909
Bva03g01917 359 CDD Bbox1_BBX-like 63 106 - -
Bva03g01917 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 17 359 - -
Bva03g01917 359 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Bva03g01917 359 ProSiteProfiles CCT domain profile. 290 332 IPR010402 GO:0005515
Bva03g01917 359 Pfam CCT motif 290 332 IPR010402 GO:0005515
Bva03g01917 359 SMART bboxneu5 16 63 IPR000315 GO:0008270
Bva03g01917 359 SMART bboxneu5 64 106 IPR000315 GO:0008270
Bva03g01917 359 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01917 Bva-Chr3 17294159 17297320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01917 1 359 C2C2-CO-like Transcription Factor Family AT3G02380 58.537 4.40e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva03g01917 zf-B_box 5.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01917 - - tcc:18601831 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01917 03 17294159 17297320 Bva04g00430 04 2566888 2569389 BWGD
Bva03g01917 03 17294159 17297320 Bva03g01917 03 17294159 17297320 ECH