Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01880 ATGGTATTCATGTTTGAACAGGCCACTACACAGGTTCTATTATCGgccttgtttttctttgtaataatCTATTCACCCCGTGAAGCTAGTTCTTCGAGAATAGCTTCGTTCGCTTTTGCTCCTGGTGTAGAAGAAAACAGCGAAGCAAATGCACTATTAAAGTGGAAAGCCAGCCTTGACAACCAAAGCCAAGCTCTTCTATCTTCTTGGACAGGCACCAGTCCTTGCAATTGGGTTGGAATTACTTGTGATGTGTCCAATTCAGTCTCCTCCATAATCCTTCAGCATTTCGGACTAAGAGGTATGCTTTACAGTCTCAGCTTTTCGTCATTTCCCAACCTCCACAAAATGGATATCAGCAACAACTTATTTTCTGGAACCATTCCCCACCAAATAGGCAACTTGTCCAATATTTTATACTTGGACCTATCTAATAACTTATGCGGTGGCTCCATACCTGAAGAAATAGGATGCTTAGTAGGTTTGAATCTGCTTAATCTTTCCAACAACAAGCTCTCTGGAACAATTCCATTCATTTTTGGAAACTTGACGCAACTTACTATATTGAGGTTGTGCACAAATAGACTTTTTGGGTCCATCCCATCTTCCATAGTAAACATGATCAATTTGAATGAGCTTGAcctttccaaaaataaattctctgGATCAATTCCTTCTAATATGGGGAACTGGACAAAGCTTAATATGTTGCGTTGGCACACAACCAGACTTTCTGGGTCCATTCCATTTTCCATAGGAAACTTGATCAATTTGAATGACCTTGATCTTTCCAGAAACAATCTCTCTGGACCAATTCCTTCTTGTATTGGAAACTTGACAAAGCTCACTCGATTGTACTTGTTCAAAAATAGACTTTCTAGATCCGTCCCATCTTCCATAGGAAACTTGATAAATTTGAGTGAGCTTTTCCTTTACAAAAACAAACTCTCTGGACCAATTCCTTCCACAATTGGGAACTTGACAAAGCTCACTATGTTGCACTGGTACAAAACGAGATTACCCGGGTCAATTCCATTTTCCATAGGAAACTTGATCAATTTGAAAGAGCTTGACCTTTCTGAAAATAAACTCTCCGATGTAATTCCTTCTAGTATTGGGAACTTGACAAGGCTCACTATATTGTACTTGTTCACAAACAGAATTTCTGGATCAATTCCATTTTCCATAGGAAACTTGATTGATTTGAATGAACTTATCCTTTACGAAAACAATCTAGTAGGACCAATTCCTTCTAGTATTGAGAATTTGACAAAGCTGACTATATTGTACTTGTTCACAAATAGACTTTCTGGGTCAATTCCATTTTCCATAGGAAACATGATTAGTTTGAATGAAATTGCTctttatgaaaacaaaatttctggATCAATTCCTTCTAGTATTGGGAACTTGATAAAGCTCACTTTGAATTTGTTGGGGAAAAGCATTCCCTCTGAGTTAGGCCTACTGCAATCTCTTCAAATTTTGGATCTTAGTTGCAACCTGTTGACTGGAATAATACCGACTACACTTGGGCAAGCTCTACGCTTGGAAACATTGAACTTGTCACATAATAATCTCTCTGGTGTCATTCCATCTAGTTTTTGTGAGATGATGAGCTTGACTTCCATTGATATATCTTACAACCAGCTAGAGGGACCCCTTCCAGACATTCCATCCTTCCGTAATGCTACAATTGCAATATTTAGGAATAACAAAGGCTTGTGTGGTAATATCTCTGGTTTAACTGCCTGCCAAACAGTTAAAAGTGATTCTTATGATCCAAAGAGCCGCAAAATCATGTTACGAGTTCTACTCCTCACTCTGGGTATATTGCTGCTAGTATTGTTTGTATTGGGAGTTGCATATGTTCTTCGTCGtggcaaaagaaataaactaaatGAGGATAGCGAAGCACAATCTCAAAATGTTTACTTTGCATGGggttttgaaggaaaaagaacatATGAAAATCTCATTGAAGCCACTGAGGGATTCAACAACAAATATCTCATCGGGGAAGGAGGGTGTGCTAGTATTTACAAAGCCCGGTTACCCGATGGTCTAGTTGTTGCTGTGAAGAAATTTTGCTCAATGCTAGATGGTGAAATACctaatttaaaagtatttacaaGTGAGATTCGAGCCTTGACTGAAATTAGGCATCGAAACATTGTGAAACTATATGGGTTTTGTTCACATCCAAGGCTCacatttttagtttatgaatttttggAAGGCGGCAGCCTGGATAAGATACTCAACAATGACACTCAATCAATTGCATTGGATTGGCATAGAGGGATGAATATTGTTAAAGACTTAGAATGTGAGGCTCACATTTCTGACTTCGGAATGGCTAAGTTTCTAAAGCCAACTCATCCAATTGGACCTCATTTGCAGGCACCATCGGTTATTCTGCCCCAGcTAGCTTACACAATGGAAGTGAATGAGAAATGTGATGTTTATAGCTTTGGAGTATTAGTCTTGGAGATACTAATGGGAAAGCATCCAGGAgatattattcatttgttgACATCGTCTTTATCAACAAATCATAATTTGGCATCAAAGGATTTGTTGGATCAACGGCTTTCTCATCCTTTGAACCCAATTGCTGGGAGGTG 2627 0.3681 MVFMFEQATTQVLLSALFFFVIIYSPREASSSRIASFAFAPGVEENSEANALLKWKASLDNQSQALLSSWTGTSPCNWVGITCDVSNSVSSIILQHFGLRGMLYSLSFSSFPNLHKMDISNNLFSGTIPHQIGNLSNILYLDLSNNLCGGSIPEEIGCLVGLNLLNLSNNKLSGTIPFIFGNLTQLTILRLCTNRLFGSIPSSIVNMINLNELDLSKNKFSGSIPSNMGNWTKLNMLRWHTTRLSGSIPFSIGNLINLNDLDLSRNNLSGPIPSCIGNLTKLTRLYLFKNRLSRSVPSSIGNLINLSELFLYKNKLSGPIPSTIGNLTKLTMLHWYKTRLPGSIPFSIGNLINLKELDLSENKLSDVIPSSIGNLTRLTILYLFTNRISGSIPFSIGNLIDLNELILYENNLVGPIPSSIENLTKLTILYLFTNRLSGSIPFSIGNMISLNEIALYENKISGSIPSSIGNLIKLTLNLLGKSIPSELGLLQSLQILDLSCNLLTGIIPTTLGQALRLETLNLSHNNLSGVIPSSFCEMMSLTSIDISYNQLEGPLPDIPSFRNATIAIFRNNKGLCGNISGLTACQTVKSDSYDPKSRKIMLRVLLLTLGILLLVLFVLGVAYVLRRGKRNKLNEDSEAQSQNVYFAWGFEGKRTYENLIEATEGFNNKYLIGEGGCASIYKARLPDGLVVAVKKFCSMLDGEIPNLKVFTSEIRALTEIRHRNIVKLYGFCSHPRLTFLVYEFLEGGSLDKILNNDTQSIALDWHRGMNIVKDLECEAHISDFGMAKFLKPTHPIGPHLQAPSVILPQLAYTMEVNEKCDVYSFGVLVLEILMGKHPGDIIHLLTSSLSTNHNLASKDLLDQRLSHPLNPIAGR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01880 875 Gene3D Ribonuclease Inhibitor 200 299 IPR032675 -
Bva03g01880 875 SUPERFAMILY L domain-like 48 263 - -
Bva03g01880 875 ProSiteProfiles Protein kinase domain profile. 666 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g01880 875 Pfam Leucine rich repeat N-terminal domain 46 84 IPR013210 -
Bva03g01880 875 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 770 873 - -
Bva03g01880 875 Gene3D Transferase(Phosphotransferase) domain 1 749 873 - -
Bva03g01880 875 SUPERFAMILY RNI-like 224 556 - -
Bva03g01880 875 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 389 478 - -
Bva03g01880 875 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 39 183 - -
Bva03g01880 875 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 389 478 - -
Bva03g01880 875 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 39 183 - -
Bva03g01880 875 Gene3D Ribonuclease Inhibitor 305 588 IPR032675 -
Bva03g01880 875 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 243 345 - -
Bva03g01880 875 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 165 292 - -
Bva03g01880 875 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 474 774 - -
Bva03g01880 875 SMART LRR_typ_2 159 182 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 423 447 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 490 513 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 516 537 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 255 278 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 375 399 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 207 231 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 351 374 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 111 135 IPR003591 -
Bva03g01880 875 SMART LRR_typ_2 279 303 IPR003591 -
Bva03g01880 875 Pfam Protein kinase domain 668 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g01880 875 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 770 873 - -
Bva03g01880 875 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 336 441 - -
Bva03g01880 875 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 474 774 - -
Bva03g01880 875 Gene3D Phosphorylase Kinase; domain 1 627 744 - -
Bva03g01880 875 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 243 345 - -
Bva03g01880 875 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 336 441 - -
Bva03g01880 875 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 165 292 - -
Bva03g01880 875 SUPERFAMILY Protein kinase-like (PK-like) 654 840 IPR011009 -
Bva03g01880 875 Gene3D Ribonuclease Inhibitor 45 199 IPR032675 -
Bva03g01880 875 PRINTS Leucine-rich repeat signature 162 175 - -
Bva03g01880 875 PRINTS Leucine-rich repeat signature 351 364 - -
Bva03g01880 875 ProSiteProfiles Leucine-rich repeat profile. 516 537 IPR001611 GO:0005515
Bva03g01880 875 Pfam Leucine rich repeat 112 172 IPR001611 GO:0005515
Bva03g01880 875 Pfam Leucine rich repeat 348 388 IPR001611 GO:0005515
Bva03g01880 875 Pfam Leucine rich repeat 492 551 IPR001611 GO:0005515
Bva03g01880 875 ProSiteProfiles Leucine-rich repeat profile. 353 375 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01880 Bva-Chr3 17035454 17039077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01880 35 792 Receptor kinase-like Gene Family AT4G08850 37.444 3.54e-161 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva03g01880 Pkinase 5.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01880 - - gmx:100795732 687.952