Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01872 ATGTTCCTCATGTTTGAACAGGCCCCTTGGCGGGCTCTATTAATGACCCTTTGTTTCCTCGTAATTATCTGCCTGCCCCATGTTGCTAGTTCTTCAAAAACTGCATCCTTTGCTCTTGCTCCTGCGACAGCAGAAGAAAACAGCGAAGCAAATGCACTATTAAAGTGGAAAGCCAGCCTTGACAACCAAAGCCAAGCTCTCCTATCTTCTTGGACAGGTACCAGTCCTTGCAGTTGGGTTGGAATTACTTGTGATGCGTCAAACTCTATCTCCTCCATAactcttgagaattttggACTAAGAGGTACGCTTTACAGTCtcaatttttcatcatttccCAGCCTCCAAAAGATAGACATATGGAACAACTCATTTTATGGAACTGTTCCTCACCAGATTGGTAACTTGTCCAGTATTTTTCACTTGGACCTCTCTGATAATTTTTTCAGTGGCTCCATACCTGAAGAAATGGGATACTTGGTAGGTTTGAATTACCTTAATCTTTCCATCAACAATCTTTCTGGAGAAATTCCTTTCATTGTTGGAAACTTGACACAACTTACTATATTAGAGTTGTTTGAAAATACACTTTCTGGATCCATCTCATCTTCCATAGGAAACTTGATAGATTTGAGTGAGCTTTCTCTTTATGAAAACAATCTCTCTGGAACAATTCCTTCCACTATTGGAAACTTGACAAAGCTCACTAAGTTGTATTGGTACAAAACCAAACTTTTTGGGTCTATTCCATTTTCCATAGGAAACTTAATCAACTTGAATGAGCTTGACCTTTCTACAAATAGACTCTCTGGACCACTTCCTTCTAGCATTGGGAATTTGACAAAGCTCACTGTATTGCAATTGTTCGATAATAGGCTTTCCGGTCCAATTCCATTTTCCATAGGAAACTTGATTGGTTTAGAAAAACTTCCCCTTTATGAAAACGAACTCTCTGGACCAGTTCCTTCCTCTATTGGGAACTTGACAGAGCTTACTAGTTTGATGGTGTACTCAAACGCTATTTATGGACCAATTCCTTCAAATATTGGAAACTTGAGAAAGCTCAAATACTTAAATCTTgagaaaaactattttagtGGTACAATTCCAAGTAGCTGGAAAAATTGCACAAACCTCTTTAGAGTCAGATTTGATGATAACCAATTGACTGGAGATGTAACAAATGTATTTGGTGTATATCCAAGTTTAGACTACGTTGATATAAGCGACAACAAACTTTATGGCCAGCTTTCTTCCAACTGGGGGAAGTGCCATAATCTTACAAGTCTCAAAATCTCCAACAATAACTTGTCTGGTGGCATACCGCCTGACTTAGGTAAAGCAACCCAGCTACGTGTACTTCAACTTTCCTCAAATCATCTAACTGGAAAGCTTCCAAAGGAGTTGGGCAAGTTGACAATGCTGATTGAACTCTCCTTGAGCAATAACAAATTTACAGGTAACATTCCTGTTGAATTTGGAGCATTAGTTGAACTTGCAAATTTGGAGTTGGTAGCTAACAACTTAAGTGGCTCAATCCCAAAACAACTTGAAGGGTTACTCCATTTATGGAACTTGAATTTGAGCAGAAATTTATTTGAAGGAAGCATTCCTTCTGAGTTAGGCCGATTGCAAtctcttcaaattttagaTCTCAGTGGCAACTTGTTGACGGGAACTATACCGGCAGCACTTGGTCAAGCTCCACGGTTGGAAACTTTGAACCTGTCACACAATAATCTCTCAGGTATCATTCCATCTAGTTTTGAAGATATGATGAGCCTAACCACCATTGACAAATCATACAATCAATTAGAGGGACCATTTCCAGACATTCCACCCTTTCGTAATGCCACAATTGCATtattgagaaataataaagGATTATGTGGTAATGTCTCTGGTTTAATGCCCTGCCCTCTAGTTCAGCATGATTCTTATGATAAAAAGAGCCACAAAATCATGTTATTAGTTCTAATCCTTACTTTGGGTTTATTAATGCTAGTATTTCTTGTAGTGGGAGTAGCATGTTTTCTATGTCGTggtgaaagaaataaatcgGAAGAGGGTAGTGAAGCACAAACTCAAAATGTTTTCTCCGTATGgagttttgaagaaaaattagcatacaaaaatatcattgaAGCTACTGAGGAATTCAACAACAAATATATCATTGGAGAAGGAAGTTCCGCTCGTGTTTACAAAGCCCAGTTGCCCAATGGTAAAGTTGTTGTTGTGAAGAAACTTCACTCGGTGCTAGATGGTGAAATGCCCAATTTAAAAGCATTTGAAAGTAAGATTCAAGCCCTGACTGAAATTAGGCATCGAAACATTATGAAACTATATGGGTTTTTTTCACATTCAAGATTCTCATTTTTAGTTTGTGAATTCTTAGAAGGGGGCAGCTTGGATAAGATACTCAACAATCAGAGACAAGCAATTGTGTTAAATTGGCATAGAAGGGTCAACATTGTTAAAGGTGTGGCTAATGCCTTATCATATATGCACCATGATTGTTCACCTCCAATAGTTCACCGTTACATATCAAGTAAGAACATTCTTTTAGATTTGGAGTATGAGGCTCATATCTCTGACTTCGGAACGGCTAAGCTTTTAAGGGCCGACTCATCCAATTA 2639 0.3687 MFLMFEQAPWRALLMTLCFLVIICLPHVASSSKTASFALAPATAEENSEANALLKWKASLDNQSQALLSSWTGTSPCSWVGITCDASNSISSITLENFGLRGTLYSLNFSSFPSLQKIDIWNNSFYGTVPHQIGNLSSIFHLDLSDNFFSGSIPEEMGYLVGLNYLNLSINNLSGEIPFIVGNLTQLTILELFENTLSGSISSSIGNLIDLSELSLYENNLSGTIPSTIGNLTKLTKLYWYKTKLFGSIPFSIGNLINLNELDLSTNRLSGPLPSSIGNLTKLTVLQLFDNRLSGPIPFSIGNLIGLEKLPLYENELSGPVPSSIGNLTELTSLMVYSNAIYGPIPSNIGNLRKLKYLNLEKNYFSGTIPSSWKNCTNLFRVRFDDNQLTGDVTNVFGVYPSLDYVDISDNKLYGQLSSNWGKCHNLTSLKISNNNLSGGIPPDLGKATQLRVLQLSSNHLTGKLPKELGKLTMLIELSLSNNKFTGNIPVEFGALVELANLELVANNLSGSIPKQLEGLLHLWNLNLSRNLFEGSIPSELGRLQSLQILDLSGNLLTGTIPAALGQAPRLETLNLSHNNLSGIIPSSFEDMMSLTTIDKSYNQLEGPFPDIPPFRNATIALLRNNKGLCGNVSGLMPCPLVQHDSYDKKSHKIMLLVLILTLGLLMLVFLVVGVACFLCRGERNKSEEGSEAQTQNVFSVWSFEEKLAYKNIIEATEEFNNKYIIGEGSSARVYKAQLPNGKVVVVKKLHSVLDGEMPNLKAFESKIQALTEIRHRNIMKLYGFFSHSRFSFLVCEFLEGGSLDKILNNQRQAIVLNWHRRVNIVKGVANALSYMHHDCSPPIVHRYISSKNILLDLEYEAHISDFGTAKLLRADSSN 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01872 879 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 189 879 - -
Bva03g01872 879 Gene3D Ribonuclease Inhibitor 299 396 IPR032675 -
Bva03g01872 879 Gene3D Ribonuclease Inhibitor 195 298 IPR032675 -
Bva03g01872 879 Gene3D Ribonuclease Inhibitor 495 639 IPR032675 -
Bva03g01872 879 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 122 223 - -
Bva03g01872 879 SUPERFAMILY RNI-like 297 607 - -
Bva03g01872 879 ProSitePatterns Protein kinases ATP-binding region signature. 726 749 IPR017441 GO:0005524
Bva03g01872 879 Gene3D Transferase(Phosphotransferase) domain 1 799 879 - -
Bva03g01872 879 Gene3D Phosphorylase Kinase; domain 1 681 798 - -
Bva03g01872 879 SUPERFAMILY L domain-like 75 391 - -
Bva03g01872 879 Pfam Protein kinase domain 721 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g01872 879 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 189 879 - -
Bva03g01872 879 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 36 186 - -
Bva03g01872 879 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 122 223 - -
Bva03g01872 879 SMART LRR_typ_2 544 568 IPR003591 -
Bva03g01872 879 SMART LRR_typ_2 136 160 IPR003591 -
Bva03g01872 879 SMART LRR_typ_2 256 280 IPR003591 -
Bva03g01872 879 SMART LRR_typ_2 472 496 IPR003591 -
Bva03g01872 879 SMART LRR_typ_2 208 232 IPR003591 -
Bva03g01872 879 SMART LRR_typ_2 328 352 IPR003591 -
Bva03g01872 879 SMART LRR_typ_2 569 591 IPR003591 -
Bva03g01872 879 ProSiteProfiles Protein kinase domain profile. 720 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g01872 879 Gene3D Ribonuclease Inhibitor 397 494 IPR032675 -
Bva03g01872 879 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 36 186 - -
Bva03g01872 879 Pfam Leucine rich repeat N-terminal domain 47 85 IPR013210 -
Bva03g01872 879 PRINTS Leucine-rich repeat signature 544 557 - -
Bva03g01872 879 PRINTS Leucine-rich repeat signature 259 272 - -
Bva03g01872 879 Pfam Leucine rich repeat 113 173 IPR001611 GO:0005515
Bva03g01872 879 Pfam Leucine rich repeat 546 605 IPR001611 GO:0005515
Bva03g01872 879 ProSiteProfiles Leucine-rich repeat profile. 570 591 IPR001611 GO:0005515
Bva03g01872 879 Gene3D Ribonuclease Inhibitor 45 194 IPR032675 -
Bva03g01872 879 SUPERFAMILY Protein kinase-like (PK-like) 699 877 IPR011009 -
Bva03g01872 879 Pfam Leucine Rich Repeat 354 376 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01872 Bva-Chr3 16923323 16925962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01872 34 879 Receptor kinase-like Gene Family AT4G08850 43.956 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva03g01872 Pkinase 1.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01872 - - pop:18108643 862.448