Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01871 ATGGTCTTCATGATGACGGCCTTGCTTTTCCTTGTGATAATCAATCCACCCCATGTTGCTAGTCTTTCGAAAACAGGTTCCTTTGCTTTTGCTCTTGCTgcagaagaaaacaatgaagcAAATGCAATATTAAAGTGGAAAGACAGCCTTGACAACCAAAGCCAAACTCTTCTATCTTCTTGGACAGGTACCAGTCCTTGCGAATGGGTTGGAATTACTTGTGATGTATCCAATTCTGTCTCCTCCATAATCCTTCAGAATTTCGGATTAAGAGGAAGCTTGATCGATTTGAAAGAACTTGCTCTTTTTCAAAACAAACTCTCTGGAATAATTCCTTCCGGTGTTGGAAACTTGACAAAGCTTACTTTATTGAGCTTGTACAAAAATAGACTTTCTGGATCAATCCCATCTTCAATATCAAATTTGGTTGATTTGAATATCCTTAGCCTTTGCCAAAACAAACTCTGTGGACCAATTCCTTCGACTATAGGGAAATTGGCAGAGctcatttatttaatcttgtactcaaattcaatttctggACCGATTCCTTCCAATATTGGCAACTTGAGAcagttgaaatattttattgctcAGAATAACTACTTAAGCGGTCCAATTCCAAGTGGCTTGAACAATTGGACAAACATTTTTAGAGTTAGATTGGATGACAATCAATTAACAGGAGATATAAGACATGCATTTGGTGTATATCCAAGTTTAGACTACATTGACTTGAGTAACAATAAACTTTATGGCCCGCTTTCCACAAATTGGGGGAAGTGCCATAATCTTACAAGCCTCAAAATCTCCAACAACAACTTATCTGGAAGCATACCTCCAAAATTAGCTGAAGCAATCCATCTACATGTGCTTCGCCTTTCCTCAAATCGTCTAACTGGAAAGATCCCCAAGGAATTGGGTAAGTTAACACTGTTGATCGAACTCTCCTTGAGCAACAATAAGTTTTCGGGTAACATTCCCATTGAAATTGGGTCCTTGCTTGCACTTGAAAGTTTAGAGTTGGCAGTTAACAATTTAAGTGGTTCAATCGCAAAACAACTTCAAGGGTTGCTCCGTTTAAGGAACTTGAATTTAAGTAGAAATTTATTGAAGGAAAGTATTCCCTCCGAGTTAGGCCATTTGCaatctcttcaaaatttaGATCTCAGTGGCAACTTGTTGAACGGGACAATACCAATGACACTTGGGCAAGCTCCACGATTGGAAACATTGAACTTGTCACGTAACAATCTCTCAGGTGTCATTCCTTCAAGTTTTAATGACATGATGAGCTTGACTTCCATTGATATATCATATAACCAATTAGAGGGATCACTTCCACATATTCCAAGCCTTCCGTTCTCATTTTTGGTTTATGAGTTCTTGGAAAGGGGAAGCTTGGATAAGATACTCAGCAATGAGACACTGGCAATTGCACTGGATTGTAAGAACATTCTTTTAGATTTAGAATATGAGGCTCACGTCTCTGACTTTGGAACGGCGAAACTTCTAAAAGCTGattcatccaactggacctcATTTGCAGGCACTTTGGAACTAGCATATACAATGGAAGTGAATGAGAAATGTGATGTTTATAGCTTTGGAATACTAACCTTGGAGATACTAATGGGGAAGCATCCGGGAGATCTGATCTCTTCTTTGTCATCGTCTTTATCAACAGCTCGTAACTTTGCATTGAAGGATTTGTTAGATCCACGGCTTTGTCACCCTGTGAACCCAATTGCTGAGGAGGTGATTTTGATGGCAAATACATGGTTTGCTTGCTTGAATGAAAGTCCACATTCTCGTCCAACCATGGATCAAGTGGCTAAGGACTTCGTCATACCCAGATCGATTCCTTG 1868 0.3731 MVFMMTALLFLVIINPPHVASLSKTGSFAFALAAEENNEANAILKWKDSLDNQSQTLLSSWTGTSPCEWVGITCDVSNSVSSIILQNFGLRGSLIDLKELALFQNKLSGIIPSGVGNLTKLTLLSLYKNRLSGSIPSSISNLVDLNILSLCQNKLCGPIPSTIGKLAELIYLILYSNSISGPIPSNIGNLRQLKYFIAQNNYLSGPIPSGLNNWTNIFRVRLDDNQLTGDIRHAFGVYPSLDYIDLSNNKLYGPLSTNWGKCHNLTSLKISNNNLSGSIPPKLAEAIHLHVLRLSSNRLTGKIPKELGKLTLLIELSLSNNKFSGNIPIEIGSLLALESLELAVNNLSGSIAKQLQGLLRLRNLNLSRNLLKESIPSELGHLQSLQNLDLSGNLLNGTIPMTLGQAPRLETLNLSRNNLSGVIPSSFNDMMSLTSIDISYNQLEGSLPHIPSLPFSFLVYEFLERGSLDKILSNETLAIALDCKNILLDLEYEAHVSDFGTAKLLKADSSNWTSFAGTLELAYTMEVNEKCDVYSFGILTLEILMGKHPGDLISSLSSSLSTARNFALKDLLDPRLCHPVNPIAEEVILMANTWFACLNESPHSRPTMDQVAKDFVIPRSIP 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01871 622 ProSiteProfiles Protein kinase domain profile. 289 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g01871 622 SUPERFAMILY RNI-like 99 448 - -
Bva03g01871 622 SMART serkin_6 409 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g01871 622 Pfam Protein tyrosine and serine/threonine kinase 481 614 IPR001245 GO:0004672|GO:0006468
Bva03g01871 622 SMART LRR_typ_2 382 406 IPR003591 -
Bva03g01871 622 SMART LRR_typ_2 310 334 IPR003591 -
Bva03g01871 622 SMART LRR_typ_2 407 429 IPR003591 -
Bva03g01871 622 SMART LRR_typ_2 118 142 IPR003591 -
Bva03g01871 622 SMART LRR_typ_2 166 190 IPR003591 -
Bva03g01871 622 SMART LRR_typ_2 358 381 IPR003591 -
Bva03g01871 622 Gene3D Transferase(Phosphotransferase) domain 1 478 617 - -
Bva03g01871 622 Pfam Leucine rich repeat 407 444 IPR001611 GO:0005515
Bva03g01871 622 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Bva03g01871 622 SUPERFAMILY Protein kinase-like (PK-like) 455 615 IPR011009 -
Bva03g01871 622 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 92 452 - -
Bva03g01871 622 Gene3D Ribonuclease Inhibitor 192 461 IPR032675 -
Bva03g01871 622 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 92 452 - -
Bva03g01871 622 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 28 96 - -
Bva03g01871 622 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 483 617 - -
Bva03g01871 622 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 28 96 - -
Bva03g01871 622 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 483 617 - -
Bva03g01871 622 Gene3D Ribonuclease Inhibitor 36 186 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01871 Bva-Chr3 16909187 16912496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01871 456 518 Receptor kinase-like Gene Family AT4G08850 43.158 4.63e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva03g01871 PK_Tyr_Ser-Thr 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01871 - - gmx:100780938 425.246