Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01855 ATGTTTTCCTCCACTTATAGCTCCAACCCTTTCCCTTGCTtcccctcttcttcttcttcttcttttccttctcatcTTCCTTTTCTATCCCATGAAAATGCAGCTGCTTCTGCTGAAAACATTCTAATTCTTCATGACCCACTTTCAGCTATTCCCTTCATAGCCTCAAATAATGCTCCAATCCCAGAAGAGGTTAACAATTTGGCTGCTGTTGCTGCAGACTATGCTAATGGAATCGGCAAGGGAGATGATATTCCCTTCTTTCCCCATTTTCTGGCCAACAAGAAAGCACCAAAGAAAGATAGACACAGCAAAATTTACACATCACAGGGTTTGAGGGATCGGAGAGTGAGATTGTCCATCGAGATCGCCAGGAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCGAGCAACACGCTCGACTGGCTCTTCACCAAGTCGAAGAAAGCAATTAAAGAGCTAGCTCGGAGCAAGAATAGCTCAAGCGCGGGTGGCGGTGGCGATGGCAGTGCCAAAagcttctcttcctcttctgaTGAAGTGGTTTCAGGGATCAACGACATGGATATTGTGCCAAACCTACAAGGGAATGATGATTCCAATGGAAAGTCATTGACGGGTTTTGATGATGCAGCTGCTAAAGAGAAGAAGCTGAAAAGGGCACAGAAGGATCAACTTGAAGCTGTTCGTGTAAGTGCAAAGAAGGAGTCGAGGGAAAAAGCAAGGGCAAGAGCCAGGGAAAGGACAAGTTACAAGATGTGTACTACCACTAGCACTGGGAGAGTGCAAGAGTTGAAGAAAAGATGCTCTGCTGCagaaaatcatcaaattcTTCACCAATTGAAGTCTCCCATTATTCAAACTGCAGCAGAAGCTTCTGCAAAATCTCCCAGGTTGATCCAACCTCACCCAGTAACCAGTGAAGCACAAAGAGACAACTTCAATGTTATTGAAGAATCTATTGTGATCAAGAGGAAGTTGAAGCCATCTATGAATTCTTCTCCTCATCAACAAAGCCTTGTGATCCCTAAAGAACCATGGACTGACCAAAATGAATCACACCCATTTCACAATTTGGCTCAAAATTGGGATACTAACAGTGCCATTGGACGCTCTAGCTTTTGTGCATTTGCCAGCATGAACCTATCTACGGAGCTTCAGATCTTTGGAAAGCCTTGGGAGGAGTGCACCAATCAGCAACGTTTACAATA 1220 0.4189 MFSSTYSSNPFPCFPSSSSSSFPSHLPFLSHENAAASAENILILHDPLSAIPFIASNNAPIPEEVNNLAAVAADYANGIGKGDDIPFFPHFLANKKAPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSKNSSSAGGGGDGSAKSFSSSSDEVVSGINDMDIVPNLQGNDDSNGKSLTGFDDAAAKEKKLKRAQKDQLEAVRVSAKKESREKARARARERTSYKMCTTTSTGRVQELKKRCSAAENHQILHQLKSPIIQTAAEASAKSPRLIQPHPVTSEAQRDNFNVIEESIVIKRKLKPSMNSSPHQQSLVIPKEPWTDQNESHPFHNLAQNWDTNSAIGRSSFCAFASMNLSTELQIFGKPWEECTNQQRLQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01855 406 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
Bva03g01855 406 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 5 403 IPR005333 GO:0003700
Bva03g01855 406 Pfam TCP family transcription factor 98 258 IPR017887 -
Bva03g01855 406 MobiDBLite consensus disorder prediction 159 182 - -
Bva03g01855 406 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 5 403 - -
Bva03g01855 406 MobiDBLite consensus disorder prediction 158 182 - -
Bva03g01855 406 MobiDBLite consensus disorder prediction 233 252 - -
Bva03g01855 406 ProSiteProfiles R domain profile. 238 255 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01855 Bva-Chr3 16783751 16785466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01855 95 367 TCP Transcription Factor Family AT1G67260 34.643 9.17e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva03g01855 TCP 3.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01855 - - gmx:100801549 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01855 03 16783751 16785466 Bva06g01071 06 8674253 8675540 ECH
Bva03g01855 03 16783751 16785466 Bva05g00628 05 3114036 3115334 ECH
Bva03g01855 03 16783751 16785466 Bva03g01855 03 16783751 16785466 ECH
Bva03g01855 03 16783751 16785466 Bva04g00479 04 2873978 2876253 ECH