Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01833 ATGCGGATGAGCTGTAATGGATGCCGGGTTCTGCGAAAGGGTTGCAGTGAGAATTGTAGCATAAGACCCTGTTTGCAGTGGCTCAAAAGCCCGGAATCTCAAGCAAATGCTACTGTGTTTCTTGCTAAGTTCTATGGCCGCGCTGGGCTTATGAATCTCATCAACTCTGGTCCCGAACATCTTCGCCCAGcGATTTTTCGTTCTTTGTTGTATGAGGCATGCGGGCGGATAGTGAACCCAATTTATGGATCGGTCGGGTTGTTGTGGTCGGGGAGTTGGCAGCTCTGCCAATCCGCCGTGGAGGCGGTGTTGAAGGGCGCGCCGATCACACCGATCACTTCGGAAGCTGCCGCGAATGGGCGGGGTCCACCGCTGAAGGCGTACGACATTCGCCACGTGTCGAAGGACGAGAACTCTGCCGCGTCTACCGATCCTAAACGAGCTAAGACTCGGTCGCGGAGGAAGCGTGCCGTCGCCAAGCCGAAAGCTAACAAGGATGCGACGGCGACCGGGTTGGGGAGTGTTGAGGAGGACTCGCCGCGTGAGCCGAGTCCAATCTGGACCGCCACCGAAGAAGTGGTGAACCGGTCAGTGAGTCATGACTCGTCGTTGAGTCACCAGTCGGAGGCGCCGAACGCGGTGGAGGGTGAGAGCAAAGAGAGCAAAGAAAGCGAGAGCATGATCTCGGTTGAAACCACTGAACCGGAGACTTCGATGCTCTTCCGAGACGAACCGGAATCCGTAGCAAAGCCGAGCAACCGAACCGAGGACAGTGGCGATGTTGCACTCGAACTGACACTGGGGTTCCAGTCGACGCCACGTGCTCATCACGTGGTTCCGGTGAAGAAGAGGAGGATTTA 860 0.5663 MRMSCNGCRVLRKGCSENCSIRPCLQWLKSPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQSAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKDENSAASTDPKRAKTRSRRKRAVAKPKANKDATATGLGSVEEDSPREPSPIWTATEEVVNRSVSHDSSLSHQSEAPNAVEGESKESKESESMISVETTEPETSMLFRDEPESVAKPSNRTEDSGDVALELTLGFQSTPRAHHVVPVKKRRI 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01833 286 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Bva03g01833 286 MobiDBLite consensus disorder prediction 237 253 - -
Bva03g01833 286 MobiDBLite consensus disorder prediction 213 229 - -
Bva03g01833 286 MobiDBLite consensus disorder prediction 132 261 - -
Bva03g01833 286 MobiDBLite consensus disorder prediction 132 147 - -
Bva03g01833 286 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 276 - -
Bva03g01833 286 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 276 - -
Bva03g01833 286 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Bva03g01833 286 MobiDBLite consensus disorder prediction 190 212 - -
Bva03g01833 286 PIRSF AS2 1 286 IPR017414 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01833 Bva-Chr3 16534105 16535515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01833 1 286 AS2 family AT3G02550 58.276 7.22e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva03g01833 LOB 1.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01833 - - mdm:103404890 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01833 03 16534105 16535515 Bva03g01833 03 16534105 16535515 ECH
Bva03g01833 03 16534105 16535515 Bva04g00531 04 3463511 3464902 ECH