Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01816 ATGGCTGATATTGATCATTACCATGCAAAACCTAACCCTACCACCACCCAATCTCTGAAGCTCTTTGGCATTAACATTCACAATGTTCCTGAAGATCACAGCGATGCAGACTCAAATAAATCCCCATCCGGGTCACCGGAATCGGAGCCTTTGAACTCCGGCGAAGCCCGGAAATATGAGTGCCAGTATTGTGGCCGGGAGTTTGCTAATTCACAAGCACTTGGTGGACACCAAAACGcacataagaaagaaagacagcTCCTAAAGCGTGCTCAAATGCAAGCTGCTCATTGCTTTGCTGCTTCACATATGCCAAACCCGCTCATATCAGGGTTCTCACAGCCACCGCGCCTCTTTGCCGGAGCACCGCCACCACCACGGCAGTCATCTTCATGGCTATGCGGAAGTACCTCCCCAGCTTTTGGAGCATATCATTCAGGGGCCTTTGCAGCGCCAGGTAGGCGAGTCTATGCCACTGGAGGTTATGGAGGGTCAGCTGTGACGGCTTTACCTGATATCGGAGCCCGGCCAACACCGATAATCAATAGCTTTGGCGGTGGCGATGGTGGTAGCGACCAAGGCTTTGGTTTGGATTTGCATCTGAGTCTATA 611 0.4992 MADIDHYHAKPNPTTTQSLKLFGINIHNVPEDHSDADSNKSPSGSPESEPLNSGEARKYECQYCGREFANSQALGGHQNAHKKERQLLKRAQMQAAHCFAASHMPNPLISGFSQPPRLFAGAPPPPRQSSSWLCGSTSPAFGAYHSGAFAAPGRRVYATGGYGGSAVTALPDIGARPTPIINSFGGGDGGSDQGFGLDLHLSL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01816 203 Pfam C2H2-type zinc finger 59 84 - -
Bva03g01816 203 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Bva03g01816 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Bva03g01816 203 PANTHER ZINC FINGER PROTEIN 6-LIKE 1 203 - -
Bva03g01816 203 SUPERFAMILY beta-beta-alpha zinc fingers 57 86 IPR036236 -
Bva03g01816 203 Gene3D Classic Zinc Finger 46 105 - -
Bva03g01816 203 MobiDBLite consensus disorder prediction 1 54 - -
Bva03g01816 203 PANTHER ZINC FINGER PROTEIN 5 1 203 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01816 Bva-Chr3 16216945 16217556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01816 14 203 C2H2 Transcription Factor Family AT1G67030 42.453 4.18e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva03g01816 zf-C2H2_6 4e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01816 03 16216945 16217556 Bva03g01816 03 16216945 16217556 ECH