Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01792 ATGTCTTCATCGAATTCATGGACCGCTAAGGACGATAAAGCCTTTGAAACTGCTCTGGCCATCTATGACAAGGATTCTCCTCAACGTTGGCAGGATATTGCCAAGGCTGTTGGTGGTAAAACTGTGGAGGAAGTGAAAAGGCGCTACCAACTCCTCGTGGACGACCTTAAGCTTATCGAGTCAGATCAAGTGCCTTCTCCCGACTACAAGTA 212 0.4764 MSSSNSWTAKDDKAFETALAIYDKDSPQRWQDIAKAVGGKTVEEVKRRYQLLVDDLKLIESDQVPSPDYK 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01792 70 ProSiteProfiles SANT domain profile. 2 49 IPR017884 -
Bva03g01792 70 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Bva03g01792 70 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Bva03g01792 70 CDD SANT 6 53 IPR001005 -
Bva03g01792 70 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 70 - -
Bva03g01792 70 Coils Coil 42 62 - -
Bva03g01792 70 Gene3D - 1 66 - -
Bva03g01792 70 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 70 IPR044636 GO:0003700
Bva03g01792 70 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Bva03g01792 70 SMART sant 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01792 Bva-Chr3 16060918 16061130 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva03g01792 Myb_DNA-binding 8.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01792 - - qsu:112038618 108.227