Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01761 ATGGATTCCATTCCTTCTGTAACGcccaaaaccctaaccctaagcTCCAGTGACCTGTTCCACTCTGCGAATAATTCCTTGTCCCAGCAATCCCTCCAAGCCTCGCCATCGTCATTGTCACTTTCCCCTGTTCCATCAAATTTTCCCCAATCGAAGCTAATCCCGAAGACCCGTTTCGTGGTGGATGCATTCCGCCATGCGGGCGATTTCTCTGTCTCCTACTTCCTTTCCCACTTCCACTCTGATCACTACACTGGGCTTAACCCCAGTTGGGCCAAAGGCATTGTCTTTTGCTCACAGACTACTTCTCGGCTTCTCGTTAAAGTACTCAAGATACCCTCTCAGTTTGTGTTTCCTTTACCTCTTTGTAAGCCCATTGAAATTGATGGGTGTGAAGTTGCACTGGTTGATGCCAATCATTGCCCTGGTGCAGTGCAGTTCTTATTCAAAATTCCGGTTGTTGATGGAAAATTTGAAAGGTATGTTCACACTGGTGATTTTCGGTTTTCTAAATGGATGACAGCTGAACCTCTACTCGGTGCATTTGTGGGTGCGGATGCTGTGTTTCTGGACACCACCTATTGTCATCCTAAGTTTGTATTTCCTTCCCAAAAAGAGTCTgttgattatattattgatattgtAGAGAGAGTTGAAGGTGAATATGATGATTCATTGAGGgatgttttgtttcttgttgctACTTATGTTAttggaaaagagaagattCTGTTAGAACTTGCAAATAGGTTTAAACGTAAAGTACATGTTGATGCTAGAAAAATGGAGGTTTTGCGGGCTCTTGGGTATGGTGAAAGTGGCACTTTTACAGGGGATGATTCTGAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACATGGCCATACTTTAGACCTAATTTTGTTAGAATGGAGGAGATTATGGTGGAACGAGGGTACACTAGGGTTGTAGGCTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCGCAATAGATTTAGTGTGAGGTCCAAGGATTCATTTCAGATCCATCTTGTACCATATAGTGAGCATTCAAACTATGATGAGCTCAGGTATTATGTAAAGTTTTTGAAACCAAAACAGGTGGTTCCTACTGTGGGTTTAGATGTTGAGAAAACAGATAGTAAACATGctaccaaaatgaaaaaacattttGCTGGATTAGTTGATGAAATGGCCAACAAGCAGAAATTTTTGAAGGGTTTTCTTCGAGGATCTGCTGAAGTGGGTTACAACGTTAAAAAGAATGGCCATGATTCTCTGAAGGCAGTGCAGAAAGTGGAGACAGAAATGAAGTCATCTAATGTAGAGGatgatagaaataataattccAATCTTCCTTCAGATTTGTCTTCTCTCAGAGAGTCTGTCTCACAAGATCCTACTTTCCTtaacaaagaagagaaagagaaaattgttgaAGAACTTAGTGGATGGTTGCCTGCATGGGTGACTCAAAGCCAAAAGTTAGATCTGATCAGCAAAGCAGGCACCAATGTTGTTGatgctgtttcttttttctgtgaaCATGAGGCTGAGTTTCATGAGCAATTACCTTCTCATCAAACTTATTTTCCTACATCCAACTGCAGCCCATTAAGTGACACTGATTCACCTTCACAACCATTCCCTGTTACAAACAGTAGAGTTGCTCACAAAAGTATTGGCATTTCTCCAAGTCAAGACTCTAAGTTACCTAACCTTCGGCATTGTGTAGCAAGTAGCATTTCTCCTtcaaaaagaaggagaagaagtgGAAGtaaatcaaacaagaaaataaaagtcaatGCAAAATCTGAATCAAGTGGATCAAAGCAATCCACAATAACAAGATTCTTCAGTAAAATATTGCCTAGTGGTACTCAATCTGGTAACTCCAGATCAAATCTTGATCAAAGCTATACAGTTGAAGAATCTTTGATGTctgatgttaaaaaattatacaaggaTGAGATTGATCAAAGCCATACACTTGAAGAATCTTTGACGTctgatgttaaaaaattatacaaggaTGAGATTGATCAGTTTATGCAGATAATAAATGGGAATGAATCCTTAAAAGAATATGCTGTCACTACAATTGAGAAGACCAGAGGAGATATCAATAAGGCATTGGATATATATTACTCTTGTTCTACTGATCTTGGTGCCAATGAAAGACCAGTTCAAGCTGAATGCAGCATGGACATCCTTTCACAAGAAAAACGTGTGTCACCTGAATTGAAAGTTATGCCTGATATTTCTGTGCGGAAAGTGTTAAGAGAAAATGTGGACACAACTCTTGTATCTTTACCACCTGAAAAATACAACCCCAAAGAGCATGCATGTTGGAGAGATGGGCAGCCTGCTCCATATTTACATCTTGCACGAACATTCACTTTGCTTGAGGATGAGAAAGGGAAGATAAAAGCTACTTCTATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGCTGATGTACTGCCTGCTGTGTATCTGTGCACCAACAAGCTTGCTGCAGATCATGAAAATATGGAGTTAAATATTGGTGGAAGTTTGGTTAGTGCAGCAATGGAAGAAGCATGTGGGACAAATAGATCAAAAATAAGGGAGATGTACAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGACAAACACAGAGACTACTTGCTCCACCAACACCACTTCTAATTAAGGATGTTTTCTCTGCACTTCAAAAGATCAGTGTACAAACAGGCAGTGGAAGCACTTCTCGGAAGAAAAGCATTATTGTAAATCTCATGTGTTCTTGCCGtgagaaggaaataaaatttcttgttcGGACCTTGGTCCGGAATTTGcggattggagcaatgattAGAACTGTTCTGCCTGCGTTGGCTCAAGCTGTTGTTATGAATTCCTGCCTTACATTGCACCAAGAAGGAACTGCAGAAAAGCTGAAGGAGAAGCTTCAGGCTCTCTCCGCAACAGTTGTTGAAGCATATAACATACTCCCTAGTTTGGATCTATTAGTCCCATCTGTCATGGAGGATGGCATCAATTTTTCTGCATCACATCTGTCAATGGTTCCAGGAATACCTATAAAACCTATGCTGGCAAAGATCACCAATGGCATTACCCAGGCGCTGAAGCTTTTTGAAAGGAAAGCATTCACTTGTGAGTACAAGTATGATGGCCAGCGAGCCCAAATTCACAAATTAGAAGATGGATCTATTCGAGTTTTTTCAAGAAATGGAGATGAAACTACATCTAGATTTCCTGATCTGATTGACATAATTAAAGAATCATGCAAGCCTGCTGCAGTAACTTTCATACTGGATGCAGAAATTGTTGGTGTTGATAGGAAGTGCGGAAGACTTATGTCTTTCCAGGAACTATCTTCACGTGGGAGAGGAAGCAAAGACTCCTTAATAACCATGGATAGCATCAAGGTGGACATTTGCGTGTTTGTCTTTGATATCATGTTTGCCAACAGAGAACAGCTTTTGGGTTTGCCACTCCGCCTAAGACGAAAGTaCCTGAAGGATCTCTTCTATGATGAAAAGCCTGGCTACTTTGAATATGCTAAGGAAATTACTATAGAAGCAGATGATGCGAGCCTAACATCTGAACCCACATTAACAAAGATAAAGAGTTTCCTGGAAGATGCGATCCGCTCATCTTGTGAAGGAATCATGGTAAAATCTTTAGATGTTGCTGGGTATTCTCCATCAAAGCGTGCTGACACATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGTTTAAATGATTCTCTTGATTTAGTACCAATCGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTACAATCCTGAAACTGAGGAGTATCAAAGTGTGTGTCGTGTGATGTCTGGGTTCTCCGATTCCTTTTACATAGAGATGAAAGAATTCTTTTCTGGAGACAAAATCTTGCCTAGAAAGCCACCATATTATCGAACAGCCGAGGAGCCAGACATGTGGTTTTCTCCTTTAGTTGTTTGGGAAATAAGAGGGGCGGACTTTACCGTGTCCCCAGTTCATCATGCTGCAATTGGGTTAGTGCATCCATCTCGTGGCATCTCAATCAGATTCCCTAGATTTATTTGCACCAGGTCTGATAGAAACCCAGAAGAATGTAGCACGGCTTCTGATATAGCTGATATGTTTCATTCTCAGACTAGGAAGATGGATGTGACTGCACAagattg 4268 0.384 MDSIPSVTPKTLTLSSSDLFHSANNSLSQQSLQASPSSLSLSPVPSNFPQSKLIPKTRFVVDAFRHAGDFSVSYFLSHFHSDHYTGLNPSWAKGIVFCSQTTSRLLVKVLKIPSQFVFPLPLCKPIEIDGCEVALVDANHCPGAVQFLFKIPVVDGKFERYVHTGDFRFSKWMTAEPLLGAFVGADAVFLDTTYCHPKFVFPSQKESVDYIIDIVERVEGEYDDSLRDVLFLVATYVIGKEKILLELANRFKRKVHVDARKMEVLRALGYGESGTFTGDDSETNIHVVGWNVLGETWPYFRPNFVRMEEIMVERGYTRVVGFVPTGWTYEVKRNRFSVRSKDSFQIHLVPYSEHSNYDELRYYVKFLKPKQVVPTVGLDVEKTDSKHATKMKKHFAGLVDEMANKQKFLKGFLRGSAEVGYNVKKNGHDSLKAVQKVETEMKSSNVEDDRNNNSNLPSDLSSLRESVSQDPTFLNKEEKEKIVEELSGWLPAWVTQSQKLDLISKAGTNVVDAVSFFCEHEAEFHEQLPSHQTYFPTSNCSPLSDTDSPSQPFPVTNSRVAHKSIGISPSQDSKLPNLRHCVASSISPSKRRRRSGSKSNKKIKVNAKSESSGSKQSTITRFFSKILPSGTQSGNSRSNLDQSYTVEESLMSDVKKLYKDEIDQSHTLEESLTSDVKKLYKDEIDQFMQIINGNESLKEYAVTTIEKTRGDINKALDIYYSCSTDLGANERPVQAECSMDILSQEKRVSPELKVMPDISVRKVLRENVDTTLVSLPPEKYNPKEHACWRDGQPAPYLHLARTFTLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKLAADHENMELNIGGSLVSAAMEEACGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSGSTSRKKSIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVMNSCLTLHQEGTAEKLKEKLQALSATVVEAYNILPSLDLLVPSVMEDGINFSASHLSMVPGIPIKPMLAKITNGITQALKLFERKAFTCEYKYDGQRAQIHKLEDGSIRVFSRNGDETTSRFPDLIDIIKESCKPAAVTFILDAEIVGVDRKCGRLMSFQELSSRGRGSKDSLITMDSIKVDICVFVFDIMFANREQLLGLPLRLRRKYLKDLFYDEKPGYFEYAKEITIEADDASLTSEPTLTKIKSFLEDAIRSSCEGIMVKSLDVAGYSPSKRADTWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKILPRKPPYYRTAEEPDMWFSPLVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFICTRSDRNPEECSTASDIADMFHSQTRKMDVTAQD 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01761 1422 SUPERFAMILY Nucleic acid-binding proteins 1268 1412 IPR012340 -
Bva03g01761 1422 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1036 1259 - -
Bva03g01761 1422 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 774 1024 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva03g01761 1422 MobiDBLite consensus disorder prediction 448 470 - -
Bva03g01761 1422 MobiDBLite consensus disorder prediction 441 471 - -
Bva03g01761 1422 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 6 798 - -
Bva03g01761 1422 SUPERFAMILY Metallo-hydrolase/oxidoreductase 74 377 IPR036866 -
Bva03g01761 1422 Pfam ATP dependent DNA ligase C terminal region 1285 1394 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bva03g01761 1422 PANTHER DNA LIGASE 6 798 - -
Bva03g01761 1422 MobiDBLite consensus disorder prediction 566 590 - -
Bva03g01761 1422 CDD OBF_DNA_ligase_I 1268 1411 - -
Bva03g01761 1422 Pfam ATP dependent DNA ligase domain 1041 1259 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bva03g01761 1422 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 853 1409 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bva03g01761 1422 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1065 1073 IPR016059 GO:0003909
Bva03g01761 1422 ProSiteProfiles ATP-dependent DNA ligase family profile. 1151 1297 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bva03g01761 1422 MobiDBLite consensus disorder prediction 566 613 - -
Bva03g01761 1422 CDD SNM1A-1C-like_MBL-fold 49 197 - -
Bva03g01761 1422 Gene3D - 54 376 IPR036866 -
Bva03g01761 1422 Coils Coil 988 1008 - -
Bva03g01761 1422 Pfam DNA repair metallo-beta-lactamase 275 377 IPR011084 -
Bva03g01761 1422 Gene3D - 774 1043 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva03g01761 1422 Gene3D - 1264 1421 IPR012340 -
Bva03g01761 1422 Gene3D - 1051 1263 - -
Bva03g01761 1422 Gene3D - 200 354 - -
Bva03g01761 1422 Pfam DNA ligase N terminus 795 971 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva03g01761 1422 Gene3D DNA ligase/mRNA capping enzyme 1070 1200 - -
Bva03g01761 1422 CDD Adenylation_DNA_ligase_I_Euk 1030 1262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01761 Bva-Chr3 15815029 15829604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01761 772 1412 Core DNA Replication Machinery Family AT1G08130 38.043 4.55e-164 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01761 - - gmx:100807673 1993.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01761 03 15815029 15829604 Bva03g01761 03 15815029 15829604 ECH