Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01709 ATGAGCGAGCAAGTTCGAAGCGAACGAAGGGATAATAGGTCCAGGGGCCCTGGCCAAAGTACTCGTCAGGAGTGGGTTCCTAGAGCATCCACCACCACTGCCCCACCATCAAATGTTAAATTAGATCAGAATGGTGACGGTGGTTGCTCAAATAATAGTGTTGCTCCACCAGCAAGTCGGCATAGAAACAATCATGGTTCAAGTGGTTACACAAATCGTCCTGTGAATCAGAGaagggaaagggaaaaaggaagGAGTGAGAATCAGGCAGGGAAGGAATTCAGAGACCCTAATTTGCCTCAATTGGTACAAGAGATTCAGGAGAAGCTAATGAAATGCAGTGTTGAATGCATGATTTGCTATGACATGGTCCGGAGATCTGCACCTATCTGGTCTTGTGTGAGCTGCTATTCTATTTTTCATCtgaattgtattaaaaaatggGCTCGGGCGCCCACTTCAGTTGATTTATCTGCAGAGAAGAATCAAGGATTTAACTGGCGGTGTCCTGGTTGTCAGTCTGTACAACTCACATCATCTAAGGAGATTAGGTATGTTTGCTTTTGCGGAAAGAGGCAAGACCCACCATCAGATTTTTACCTGACACCACATTCATGTGGAGAACCATGTGGGAAGCCTCTTCAGAGGGAGGTGTTGGTTGCTGGAGTGAGTAAGGAGGATCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCAGGTCCATGCCCTCCTTGCAAAGCATTTGCTCCTCCACGTTTGTGTCCTTGTGGGAAGAAAACAATTACCACAAGGTGCTCTGATCGGCAGTCTGTTCTTACCTGCGGTCAGCGCTGTGATAAGCTTCTAGAGTGTAGGCGTCATCGTTGTGAGCGCATTTGTCATGTCGGTCCTTGTGATCATTGTCAGGTCCTTATAAATGCCTCTTGCTTTTGCAGTAAAAAGATGGAGGTTATTCTCTGTGGGGAGATGGCTTTGAAGGGTGAGATTGAAGCTGATTCTGGTGTTTTCTCATGTGGTTCCAATTGTGGGAAAAATCTTGGTTGTGGTAATCATACTTGTAGTGACATTTGTCATCCAGGCAGCTGTGGAGAGTGTGCTTTATTGCCTAGCCGAGTTAAGACTTGTTGTTGTGGGAAAACAAGGTTGGAGGAGGAGCGGCAGAGTTGTTTGGATCCAATACCAACCTGTTCACAAGTTTGTGACAAGCCTCTTATCTGTGGCATCCATCATTGTAGAGAGGCATGTCATGCTGGAGATTGTCCACCATGTTTGATTCTAGTATCCCAGAAGTGTCGATGTGGCTCAACTTCCAGAACTGTGGAGTGCCACAAGACTGTGATGGAGAATGAGAAATATACTTGTGAAAAGCCATGTGGACGGAAAAAGAACTGTGGAAGGCATCGATGTAGTGAAAGGTGCTGTCCACTTTCTAATCCCAATAATCATCTCAGTGGGGATTGGGATCCTCACTTTTGTTCCATGCCTTGTGGAAAGAAGCTAAGGTGCGGGCAGCATGCATGTGAATCCCTCTGTCATAGTGGCCATTGTCCACCTTGTCTTGAAACTATTTTCACTGATCTGACATGTGCTTGTGGGAGGACGTCAATCCCTCCTCCACTGCCTTGTGGTACACCTCCTCCTTCATGTCAGCTTCCATGCTCTGTCCCTCAGCCTTGTGGCCATTCAGCCTCCCACAGCTGCCATTTTGGAGACTGTCCACCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTGGTTCTTAGAAACATACCTTGCGGGTCAAAAGATATCAGATGCAATAAGCTATGTGGGAAGACCAGACAGTGTGGTTTGCATGCTTGTGGCAGAACTTGTCATCTCCTGCCTTGTGACAATTCATCTGGATGTGAGCAAGGGCTGCGATCTTCTTGTGGGCAAACATGTGGTGCTCCAAGGAGAGATTGTAGGCATACATGTCCATCCCCATGTCACCCTTTATCTCCATGCCCTGATTTAAGATGTGAATTCCCAGTCACAATCACTTGTTCTTGTGGCCGTATAACAGCAAGTGTTCCTTGTGATGCTGGTGGTAGTAgtggtaattataattctgATGCCATACATGAAGCTTCCATAATTCAAAAGTTGCCTGTGCCACTTCAACCAGTGGATTCAAATGGCAAGAAAGTCCCGCTTGGACAAAGAAAGCTGGTGTGTGATGATGAATGTGCTAAGTTGGAGCGTAAGAGGCTTCTCGCTGATGCTTTTGACATTACCACTCCAAATTTAGACTCCCTCCACTTCGGTGAGAATTCTGTTGCCTCTGAATTGCTTTCTGACCTGTTCAGGCGTGATCCTAAGTGGGTTTTATCTGTGGAGGAGAGATGCAAATTTTTAGTACTTGGCAAGAGCAGGGGAACTGCACATGGTTTGAAAGTCCATGTTTTCTGCCCTATGCTGAAGGATAAGAGAGATGCAGTGAGGGTGATCGCTGAGAGATGGAAGCTTGCGGTGAGTGCTGCTGGTTGGGAGCCAAAGCGTTTTATTGTAGTTCATGTTACACCAAAGTCAAAGGCTCCAGCACGGGTGCTAGGGGTTAAGGGTACCACAACTGTAAATGTGCCCCTTCCTCCTGCATTTGATCCCTTGGTAGACATGGATCCCCGGCTTGTTGTCTCTTTCCCTGATTTACCAAGGGATGCTGATATAAGTGCATTGGTCTTAAGATTTGGTGGTGAATGTGAACTAGTCTGGTTGAATGACAAAAATGCATTGGCTGTTTTTAATGATCCTGCCAGAGCTGCTACTGCAATGAGGAGGTTGGATCATGGAACAGTTTATTATGGAGCTGTTGTATTTGCCCAAAATATTGGGTCATCAGCGGCATCTTCAGCCACCAGTGCGTGGGGAGGAATTGGGACAATGAAGGAAGGAGGAGCACTGACAGCATTGAAGGGTAATCCATGGAAAAAGGCGGTGGTTCAAGAAGCAGGTTGGAGAGAAGATTCTTGGGGCGATGAAGAGTGGACAGGTGGTTCTGCTAATATCCAGCCATCTGTGTGGAAGAAAGAAGCCCCAATTGCTGCTTCATTAAATCCTTGGAGTGTCTTGGACCAAGAGTCATCTTCAAGTTCATCTGTGGCAACTGTGAAAACCGAAGTTCCTGGGAAGCAGCCAGCAAGTTCAGCCGTTTCAAGGGTAGAGTCTGATCCAGAAAGGCAGAGTGGAGGAAAGTTGGATGAAACAGAAGGTTCTGAAGTAGTAGATGACTGGGAGAAAGCTTACGAATG 3278 0.4591 MSEQVRSERRDNRSRGPGQSTRQEWVPRASTTTAPPSNVKLDQNGDGGCSNNSVAPPASRHRNNHGSSGYTNRPVNQRREREKGRSENQAGKEFRDPNLPQLVQEIQEKLMKCSVECMICYDMVRRSAPIWSCVSCYSIFHLNCIKKWARAPTSVDLSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRQDPPSDFYLTPHSCGEPCGKPLQREVLVAGVSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRQSVLTCGQRCDKLLECRRHRCERICHVGPCDHCQVLINASCFCSKKMEVILCGEMALKGEIEADSGVFSCGSNCGKNLGCGNHTCSDICHPGSCGECALLPSRVKTCCCGKTRLEEERQSCLDPIPTCSQVCDKPLICGIHHCREACHAGDCPPCLILVSQKCRCGSTSRTVECHKTVMENEKYTCEKPCGRKKNCGRHRCSERCCPLSNPNNHLSGDWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLLPCDNSSGCEQGLRSSCGQTCGAPRRDCRHTCPSPCHPLSPCPDLRCEFPVTITCSCGRITASVPCDAGGSSGNYNSDAIHEASIIQKLPVPLQPVDSNGKKVPLGQRKLVCDDECAKLERKRLLADAFDITTPNLDSLHFGENSVASELLSDLFRRDPKWVLSVEERCKFLVLGKSRGTAHGLKVHVFCPMLKDKRDAVRVIAERWKLAVSAAGWEPKRFIVVHVTPKSKAPARVLGVKGTTTVNVPLPPAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYYGAVVFAQNIGSSAASSATSAWGGIGTMKEGGALTALKGNPWKKAVVQEAGWREDSWGDEEWTGGSANIQPSVWKKEAPIAASLNPWSVLDQESSSSSSVATVKTEVPGKQPASSAVSRVESDPERQSGGKLDETEGSEVVDDWEKAYE 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01709 1092 MobiDBLite consensus disorder prediction 1 99 - -
Bva03g01709 1092 CDD NF-X1-zinc-finger 492 535 - -
Bva03g01709 1092 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 21 1089 - -
Bva03g01709 1092 SUPERFAMILY RING/U-box 106 176 - -
Bva03g01709 1092 CDD NF-X1-zinc-finger 549 597 - -
Bva03g01709 1092 CDD NF-X1-zinc-finger 396 444 - -
Bva03g01709 1092 ProSiteProfiles Zinc finger PHD-type profile. 114 175 IPR019787 -
Bva03g01709 1092 CDD NF-X1-zinc-finger 338 383 - -
Bva03g01709 1092 ProSiteProfiles Zinc finger RING-type profile. 117 173 IPR001841 -
Bva03g01709 1092 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 21 1089 IPR034078 GO:0003700
Bva03g01709 1092 Pfam NF-X1 type zinc finger 644 666 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 406 423 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 284 302 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 464 475 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 348 365 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 612 626 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 231 246 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 559 576 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 Pfam NF-X1 type zinc finger 502 519 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 CDD NF-X1-zinc-finger 640 689 - -
Bva03g01709 1092 CDD RING-CH-C4HC3_NFX1 116 173 - -
Bva03g01709 1092 CDD NF-X1-zinc-finger 206 267 - -
Bva03g01709 1092 MobiDBLite consensus disorder prediction 1067 1092 - -
Bva03g01709 1092 MobiDBLite consensus disorder prediction 1038 1092 - -
Bva03g01709 1092 CDD NF-X1-zinc-finger 274 322 - -
Bva03g01709 1092 MobiDBLite consensus disorder prediction 1038 1065 - -
Bva03g01709 1092 MobiDBLite consensus disorder prediction 18 74 - -
Bva03g01709 1092 MobiDBLite consensus disorder prediction 1 17 - -
Bva03g01709 1092 SMART znfxneu3 406 425 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 SMART znfxneu3 229 247 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 SMART znfxneu3 612 634 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 SMART znfxneu3 651 672 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 SMART znfxneu3 502 521 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 SMART znfxneu3 348 367 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 SMART znfxneu3 559 577 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 SMART znfxneu3 284 303 IPR000967 GO:0005634|GO:0008270
Bva03g01709 1092 MobiDBLite consensus disorder prediction 75 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01709 Bva-Chr3 15413719 15417944 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Bva03g01709 zf-NF-X1 1.1e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01709 K12236 - zju:107419567 1808.11