Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01681 ATGTTAGCAAATAACTCTCCGTCTTCATCAGTTCCCGCTTCTGAGCCATTCTCCTGTGCAGAGAATGCTGCAGCTACTATTaataaaaggaagagaaggCCAGCAGGAACCCCAGATCCAGATGCAGAGGTGGTGTCCCTCTCACCCAAGACGTTATTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTGCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAACTATTGAAGAGGGAGACGCCGGTGGTGAGGAAGAGAGTTTTCGTGTGCCCTGAGCCAACTTGCTTGCACCACGACCCTTGCCATGCCCTCGGTGATCTCGTTGGGATAAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCCCATCTCAAAACCTGCGGCACTCGTGGCCATTCCTGCGATTGTGGTCGTGTTTTCTCAAGAGTGGAGAGCTTTATCGAACACCAAGATGCTTGCAACATGGGGCGTCTCCGGCAGGAATCGCAGCCATTGCAGCCGGCAGCATGCTTGTCTCGAACCGCTTCGAGCCCGAGTCCGTCAAGTGAAACAAATTTCAGCACCGGTCCATGGCCAGGTTTGGTAATGCCAAAGCCAGCAGCTGAACCCTCATTCTTGAACAATAACCATAACCCTTCTGCTGAAACCTCTtccaagaacaagaagaagctgTTCCCTAACCTGGAGCTTCAGCTCTCCACGATCACTACATCGAATGCCATTGAAACTATAGCAGCTTCTTCACCCAAGATAGGCGAAACCCATTCTACCCAGTTGCAGCTTTCGATCGGATCATCGGAGATAAGTGAGAAAAACGAGTCAAACAATAGGAATTCACCAAAGGAAAGCAGCAACAGCAGCGAGAAACCAGGAGGAGGTGGCGGTGGTGCAGCGGCGGCAATGAGGCTTCAAGAGCAAGCAAGGGAGCATCTGAGGATAGCCATGGCGGAGAAAGCTTACGCTGAGGAAGCAAGGAAGCAAGCCAAGAGGCAGATTGAACTTGCAGAACAAGAGTTCTCAAACGCCAAGAGAATTAGACAAAAAGCGCAAGCTGAACTCGACAAAGCTTATGCCTTGAAAGAACATGCAATCAAGCAGATAAACTCCACTATGCTTCAAATCACTTGCCATGCTTGCAAGCAGCAGTTTCAAGCACGAACGACAATAACAACAACTACAACTACAACTCCTGCAACCCCTCTTCCCCCCGACGAGAACTCTTTGGTACTAAGCTACATGTCGTCTGCTATAACAACAGAAGGTGGCGAAGTAGAGAAAAACGACCATGGAACAACAACAGATCATGCCAAGATCACCGTTAACTCCTA 1418 0.4859 MLANNSPSSSVPASEPFSCAENAAATINKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRQESQPLQPAACLSRTASSPSPSSETNFSTGPWPGLVMPKPAAEPSFLNNNHNPSAETSSKNKKKLFPNLELQLSTITTSNAIETIAASSPKIGETHSTQLQLSIGSSEISEKNESNNRNSPKESSNSSEKPGGGGGGAAAAMRLQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFSNAKRIRQKAQAELDKAYALKEHAIKQINSTMLQITCHACKQQFQARTTITTTTTTTPATPLPPDENSLVLSYMSSAITTEGGEVEKNDHGTTTDHAKITVNS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01681 472 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 451 - -
Bva03g01681 472 MobiDBLite consensus disorder prediction 22 44 - -
Bva03g01681 472 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Bva03g01681 472 MobiDBLite consensus disorder prediction 281 329 - -
Bva03g01681 472 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Bva03g01681 472 SMART c2h2final6 135 162 IPR013087 -
Bva03g01681 472 SMART c2h2final6 58 80 IPR013087 -
Bva03g01681 472 SMART c2h2final6 99 129 IPR013087 -
Bva03g01681 472 MobiDBLite consensus disorder prediction 194 252 - -
Bva03g01681 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Bva03g01681 472 Gene3D Classic Zinc Finger 36 98 - -
Bva03g01681 472 MobiDBLite consensus disorder prediction 234 252 - -
Bva03g01681 472 Gene3D Classic Zinc Finger 120 197 - -
Bva03g01681 472 MobiDBLite consensus disorder prediction 194 219 - -
Bva03g01681 472 MobiDBLite consensus disorder prediction 453 472 - -
Bva03g01681 472 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Bva03g01681 472 PANTHER OS03G0310200 PROTEIN 1 451 IPR039288 GO:0009630
Bva03g01681 472 MobiDBLite consensus disorder prediction 281 320 - -
Bva03g01681 472 Coils Coil 341 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01681 Bva-Chr3 15255445 15258650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01681 21 455 C2H2 Transcription Factor Family AT2G01940 56.984 1.00e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva03g01681 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01681 K25871 - gmx:100800187 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01681 03 15255445 15258650 Bva03g01681 03 15255445 15258650 BWGD