Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01668 ATGGACGGTTTTGATAAAGATGAGCTGTTGATGCGGTCAAACACTCATCCCCAACTATTTAATGAACATGATGATTCTAAATTGCAGAGGCCAGCGACTAAGACACGAAGTACATCAATTTCCATTCCTATGAAGTCCACAGAGCCATGTGAGATAGAAACTATAGCAGTGGAGAGCAACACAGAACAATCTCCTTCTTTTTGTGACAATGGTGAAAATGATTTGCAGAGTAATTATGCTGGCAAAAATGAACACTTATTGAGGTCTGGGCGGATGGGAATTTGTAATGATCCTTATTGTACGACTTGCCCTGCTTACTTCAAGATTACTGAACAAAGTTATCCAAATGCTTTGGATATATCTGATCGTAAGTTCCATCATGTCCTGTATGGCGATGCGAAGGGTTGcacaagaagatttttttctttcctgtcTTCATATGTTCCTGGAGTTATTAACCCACATTGTAAATTTGCACTAAGATGGAAGAGGTTCTTTGCCATTTCTTGCTTGGTATCAATTTTTGTGGatccattctttttctttgtgctCACTGTACTGAAGGAGGAATACTGTGTTGGCTTAAACTGGCCCGTCATGACAACACTCTTAATACTTAGAAGCATGACCGATGTTGTGTACTTCTTGAATACTCTTCTTCAGTTTAGGTTGGCTTATGTGGCTCGTGATTGGGTGATTGGTGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAgggtttttttattattgacttATTTGCTGTATTTCCACTTCCTCAGATCATTGTATTGTTTGTCCTAGGAAACTCCGGAGTGAATTATACTAAGAATCTTCTGCAAACTTCCGTCCTTGCTCAGTATATTCCCAGATTGTCTAGATGTCTGCCTCTGCTAATTGGCCACTCATCAAGTGGATTCATATTTGAATCAGCCTGGGCAAATATCATCGTAAATCTTCTCACCATTATGCTATCTGGCCATGTTGTTGGGTCTTGTTGGTACCTCTTTGGTTTACAGAGGATAAATGCATGCCTACAAGCTGCCTGCTATAAAGCTCAAGTTCCTTTTTGTGCTAAACTGATTGATTGTGACCTTGCTGGAAAAGACCTggtatcaaaatattattggaGAAACAATACTGGTGCAAGTGCTTGTTTAACTGAAGATGGTTTTCATTATGGGATCTATGACAAAGCTGTCAATCTTACCACTGAACCTGATTTGATCATAAGATAtgtattttccttcttttgggGATTCCAGCAAATCAGTACTCTGGCTGGTAATTTATCCCCAAGCTATTTTATTGGGGAGGTCGTTTTCACAATAGCCATCATAGCATTGGGTCTGTTGATTTTTGCTATTCTCGTTGGAAATatacacaactttcttcagGCTCTTGGACCGAGGAGACTAGAAATGTTAAGAAGACGCCGTGATGTTGAGCAATGGTTGAAGCGTCGGCGCTTACCATACGATCTAAAGAGGAGAATACGACTGAATGAAAAGTACCACTGGGATATGACGAGAGGGGTGAATGAAGAAATGTTTCTGGAGAATTTGCCAGAAGATCTCCAGAGAGAGACACGACGTCATATCTTCAAGTTTATTAAAAGAGTAAGAATTTTTTCCCTGATGGATGAACCTATTGTAGATGCCATTCTTGAGAGACTAAGAGAGAAGACGTACATCAGAGGAAGCGTAGTTTTATATCGCGGAGGTGTGATAGAAAAGATGGTGTTTATTGTCCGTGGAAAATTGGAAAGTGTTGGAGAAGATGGAACTACAATTCCCTTATCTGAAGGGGATGTTTTTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATTCTTCTGTAAACAGAGATTGTGAAAAAGTAAGGATTCCGGGACGGCGGCTACTTAGCAAAAGAACAGTGGTGTGTATGACAAATGTGGAGGCGTTTTCACTTGGAGCCGCAGATCTTGAAGAAGTCACAAGCCTTTTTTCAAGATTCTTGAGAAATCCGCGTCTTCAAGCAGCTATAAGGTATGAATCTCCATATTGGAGACGCCTTGCAGCAACCCGTATTCAGGTTCAATGGAGATGCAGGAAAAGACGTCTTAATCGTGTGTG 2132 0.3856 MDGFDKDELLMRSNTHPQLFNEHDDSKLQRPATKTRSTSISIPMKSTEPCEIETIAVESNTEQSPSFCDNGENDLQSNYAGKNEHLLRSGRMGICNDPYCTTCPAYFKITEQSYPNALDISDRKFHHVLYGDAKGCTRRFFSFLSSYVPGVINPHCKFALRWKRFFAISCLVSIFVDPFFFFVLTVLKEEYCVGLNWPVMTTLLILRSMTDVVYFLNTLLQFRLAYVARDWVIGAGELVDHPKKIALHYLKGFFIIDLFAVFPLPQIIVLFVLGNSGVNYTKNLLQTSVLAQYIPRLSRCLPLLIGHSSSGFIFESAWANIIVNLLTIMLSGHVVGSCWYLFGLQRINACLQAACYKAQVPFCAKLIDCDLAGKDLVSKYYWRNNTGASACLTEDGFHYGIYDKAVNLTTEPDLIIRYVFSFFWGFQQISTLAGNLSPSYFIGEVVFTIAIIALGLLIFAILVGNIHNFLQALGPRRLEMLRRRRDVEQWLKRRRLPYDLKRRIRLNEKYHWDMTRGVNEEMFLENLPEDLQRETRRHIFKFIKRVRIFSLMDEPIVDAILERLREKTYIRGSVVLYRGGVIEKMVFIVRGKLESVGEDGTTIPLSEGDVFGEELLTWCLEHSSVNRDCEKVRIPGRRLLSKRTVVCMTNVEAFSLGAADLEEVTSLFSRFLRNPRLQAAIRYESPYWRRLAATRIQVQWRCRKRRLNRV 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01668 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 25 709 - -
Bva03g01668 710 Gene3D - 162 473 - -
Bva03g01668 710 SUPERFAMILY Voltage-gated potassium channels 157 471 - -
Bva03g01668 710 ProSiteProfiles cAMP/cGMP binding motif profile. 548 616 IPR000595 -
Bva03g01668 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 709 - -
Bva03g01668 710 Gene3D Jelly Rolls 546 670 IPR014710 -
Bva03g01668 710 SMART cnmp_10 548 683 IPR000595 -
Bva03g01668 710 MobiDBLite consensus disorder prediction 1 41 - -
Bva03g01668 710 Pfam Ion transport protein 164 470 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva03g01668 710 MobiDBLite consensus disorder prediction 1 31 - -
Bva03g01668 710 SUPERFAMILY cAMP-binding domain-like 476 672 IPR018490 -
Bva03g01668 710 Gene3D Helix hairpin bin 476 540 - -
Bva03g01668 710 CDD CAP_ED 548 664 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01668 Bva-Chr3 15152178 15165875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01668 1 626 Ion Channels AT3G17700 54.844 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01668 K05391 - qsu:112012101 907.516