Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva03g01667 | ATGCCGGCGAGGTCCATACCCAGAGATGCAGCGTATCAGATAATAAACGACGAGTTGATGCTGGATGGAGCACCGAGGCTCAACTTGGCGTCGTTTGTGACCACTTGGATGGAGCCTGAGTGCGGAAAGCTCATCATGGCTTCCCTTAACAAGAACTACGTTGACATGAATGAGTACCCTGTTACCACCGAGCTCCAGAACCGATGTGTAAATATGATAGCACATCTATTTCATGCTCCTATTGGAGATGAAGAGGCTGCAGTTGATGAAGAGGAAAGCCATATGACAAGCCCAACATTGTCACTGGCGCTAATGTGCAAGTTTGCTGGGAAAAATTTGCAAGTTACTTTGAGGTTGAGCTCAAGGAGCCATTCAGGGTCAACTCTGACTGGAGAGTTTGAGGATGTGAAACTCCTTAATGAACTTCTCACTAAGAAGAACAAAGAGACTTGGTGGGATATCCCAATCCATGTTGATGCAGCAAGTGGAGGGTTCATTGCTCCATTTCTCTACCCTAATCTTGAGTGGGATTTCTGCGTGCCAATAGTGAAGAGCATCAATGTTAGCGGCCCCAAGTACGGTCCTGTCTACCCTGGTGTTGGCTGGGTTGTCTGGAGGACTAAAGATGACTTGCCAGATGATCTTGTCTTTCACATCAACTATCTTGGATCTGATCAACCCACTTTCACCTTCAATTTCTCCAGAGGTATCATATATATGACTTCTGGAGAACTGGAGTATGCTAGCTA | 749 | 0.4619 | MPARSIPRDAAYQIINDELMLDGAPRLNLASFVTTWMEPECGKLIMASLNKNYVDMNEYPVTTELQVCWEKFASYFEVELKEVKLSEGYYVMDHVKAVEMVDENTICVAAIQGQL | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva03g01667 | 115 | SUPERFAMILY | PLP-dependent transferases | 1 | 114 | IPR015424 | - | |
| Bva03g01667 | 115 | Gene3D | - | 1 | 34 | - | - | |
| Bva03g01667 | 115 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 66 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
| Bva03g01667 | 115 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 5 | 67 | IPR002129 | GO:0016830|GO:0019752|GO:0030170 | |
| Bva03g01667 | 115 | PANTHER | GLUTAMATE DECARBOXYLASE | 66 | 113 | - | - | |
| Bva03g01667 | 115 | Gene3D | - | 66 | 115 | IPR015421 | GO:0003824 | |
| Bva03g01667 | 115 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 66 | - | - | |
| Bva03g01667 | 115 | PANTHER | GLUTAMATE DECARBOXYLASE | 66 | 113 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva03g01667 | Bva-Chr3 | 15149816 | 15150769 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva03g01667 | 1 | 98 | Calmodulin-binding Proteins | AT5G17330 | 64.646 | 3.77e-37 | 129 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva03g01667 | K01580 | - | gmx:100796475 | 130.183 |