LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva03g01663	ATGAATCCGAGTTCCGAGGCTGCTAGAATTGCTCTCTGTAAAGCTTTGGGAGTTTTCTCTAGCAGGATTGACTCTGATTTTGCTCCAATGGCGACGCAGGACCAAACAGAACACACAAGGCCTAGCTCTGCTGCCACAGCTGGTAATTTTTATTCCAATGGAGGTCAGCAATCAGAAAATGCTTTGCAATTGGCTGATGCAACTTCTGTTGGAAACAACCATGCTCCCAagGTGAGAAAACCGTACACCATCACTaaacaaagggaaaaatggACCGAGGAAGAGCATCAGAAGTTCCTTGAAGCTTTGAAGTTGTATGGCCGAGGTTGGCGTCAAATTGAAGAACATGTAGGGACCAAAACTGCAGTCCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCAAAgGTAGCGCGGGAATCAAATGGATGTACTGAAAGTTCTGTAAAACCAATTGATATACCTCCTCCTCGGCCAAAGAGAAAACCTCTTCATCCATATCCTCGTAAATCAATTGACTCTTATAAAGGGCACACAATATCAAATGAAGCTGAAAGATCCCCATCCCCGAATCTGGTGATTTCAGAGAAGGATACCCAATCTCCAACCTCAGTGCTAACTGCACTTGGTTCTGAAGCATTTGGGTCTGCATGTTCAGAGCAGACCAACAGATGCATTTCACCAAATTCTTGCACCACTGACATTCATTCAGCTAGCTTATCACCTGTTGACAAGGAAAATGACTGCTTGACATCCAACTTGTCTGAGGAGGAAGGGAAAGGATCTCGAGCTGCATCCTCTTTACCAACTGGTCGGAATCAGGATTGTTTGTTCAAGAAGTTGGAGTTGAATTCTGAGGCATCCCAATATTCTAAAGAAGCTACTGCCAATGTGCCAACTACCTCGACTATTAAGCTTTTTGGAAGAACCGTCAACATCGTAGATAGTCAGAAGTCATTGAATGTAGATGAGGAGAATATTAAGTCAATTGCATGTAAGCCTAATGAAGTGGTTATTTTTGAGAATGAGAAGCTCGACGAAACGTGTCCATCCAAGCAATCAGAATTATCACTGGGTCTTTATAGCGGTGATTGCAAAGTCAAATGCATGGAATACCCAAAGGAGAAACCAGGCTTTGTTGAAACCATACCCCAGTGGAATTTGTACCCAGGTGTTCCAGTTTTTTACCTTGAGCCAAGTAACCAAATTCTAAATCCAAAACCCCTTCGTCCCTCtctgaaagaaagaatgacaGAGAAGGAGAGTTCTTGTACTGGTTCTAATTCTGAATCAGTAAGCGAAACCATAAATGGAGACAAAAACTCAAACGCCGGTGATTCTCATAGTCAATCACGTCATCATGAAAGAACTGTCCCCCACAAGACTCCAAGGGGATTTGTACCATACAAAAGATGTTTAGCTGAGAGAGATTCAAGCTCGTTAATTGTTGCAATGGAAGAGAGGGAGGGGCAACGAGCTCGAGTGTGCTCATA	1490	0.4221	MNPSSEAARIALCKALGVFSSRIDSDFAPMATQDQTEHTRPSSAATAGNFYSNGGQQSENALQLADATSVGNNHAPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVARESNGCTESSVKPIDIPPPRPKRKPLHPYPRKSIDSYKGHTISNEAERSPSPNLVISEKDTQSPTSVLTALGSEAFGSACSEQTNRCISPNSCTTDIHSASLSPVDKENDCLTSNLSEEEGKGSRAASSLPTGRNQDCLFKKLELNSEASQYSKEATANVPTTSTIKLFGRTVNIVDSQKSLNVDEENIKSIACKPNEVVIFENEKLDETCPSKQSELSLGLYSGDCKVKCMEYPKEKPGFVETIPQWNLYPGVPVFYLEPSNQILNPKPLRPSLKERMTEKESSCTGSNSESVSETINGDKNSNAGDSHSQSRHHERTVPHKTPRGFVPYKRCLAERDSSSLIVAMEEREGQRARVCS	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva03g01663	496	MobiDBLite	consensus disorder prediction	154	171	-	-
	Bva03g01663	496	PANTHER	PROTEIN REVEILLE 7-RELATED	32	483	-	-
	Bva03g01663	496	Pfam	Myb-like DNA-binding domain	88	131	IPR001005	-
	Bva03g01663	496	MobiDBLite	consensus disorder prediction	174	196	-	-
	Bva03g01663	496	MobiDBLite	consensus disorder prediction	421	444	-	-
	Bva03g01663	496	MobiDBLite	consensus disorder prediction	244	269	-	-
	Bva03g01663	496	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	83	137	IPR017930	-
	Bva03g01663	496	ProSiteProfiles	SANT domain profile.	86	137	IPR017884	-
	Bva03g01663	496	MobiDBLite	consensus disorder prediction	143	196	-	-
	Bva03g01663	496	PANTHER	SWI/SNF COMPLEX-RELATED	32	483	-	-
	Bva03g01663	496	SMART	sant	87	135	IPR001005	-
	Bva03g01663	496	MobiDBLite	consensus disorder prediction	30	56	-	-
	Bva03g01663	496	ProSiteProfiles	Myb-like domain profile.	83	133	IPR001005	-
	Bva03g01663	496	Gene3D	-	90	137	-	-
	Bva03g01663	496	MobiDBLite	consensus disorder prediction	414	468	-	-
	Bva03g01663	496	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	86	135	IPR006447	GO:0003677
	Bva03g01663	496	CDD	SANT	90	133	IPR001005	-
	Bva03g01663	496	SUPERFAMILY	Homeodomain-like	82	137	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva03g01663	Bva-Chr3	15104880	15110615	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Bva03g01663		Myb_DNA-binding	9.3e-14	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva03g01663	-		-	gmx:778089	543.888