Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01662 ATGGCAGCTAACGTTGTTCCGCCTACTGCTCTAACAACCTTATCCATTACAAATACTTTCGAACGTGAGAGGCAAATACCCGGTTACTCCAAAAGCAATTACAAGAAGAACCCAATTTTAGCGTTATCGGCCAGAAAAGGCAGCTCCTTTGTGTTGGCATGTCTCCCTCCTCCGCCTCCTTCTTCATCAATCTCATCATCCGGCAGTAAACCCAGTTCTTCTCTTTCAACTAAGGTCTACGTCAGTGGGCTATCATTTCGTACTACTGAAGAGAGCCTGCGAAATGCATTTAAGAATTTTGGTGAACTTGTGGAAGTCAATCTGGTGATGGACAAAGTAGCAAATAGACCAAGAGGGTTTGCATTTCTTCGTTATGCAACTGAAGAAGAATCCCAGAAGGCTATTGAGGGGATGCATGGAAAGtTTTTGGATGGTAGAGTCATATTTGTGGAAGTTGCCAAGCCAAGATCAGAGCTACGGCAAAGATGTAAGCAAAACCCTAGATA 506 0.4368 MAANVVPPTALTTLSITNTFERERQIPGYSKSNYKKNPILALSARKGSSFVLACLPPPPPSSSISSSGSKPSSSLSTKVYVSGLSFRTTEESLRNAFKNFGELVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRCKQNPR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01662 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Bva03g01662 168 PANTHER RNA-BINDING PROTEIN 1 29 166 - -
Bva03g01662 168 SMART rrm2_1 78 151 IPR003954 GO:0003676
Bva03g01662 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Bva03g01662 168 PANTHER TRANSFORMER-2-RELATED 29 166 - -
Bva03g01662 168 SMART rrm1_1 78 151 IPR000504 GO:0003723
Bva03g01662 168 Gene3D - 22 166 IPR012677 -
Bva03g01662 168 SUPERFAMILY RNA-binding domain, RBD 64 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01662 Bva-Chr3 15101815 15104342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01662 77 166 Eukaryotic Initiation Factors Gene Family AT4G34110 31.915 4.21e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01662 - - egr:104456410 184.111