Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01639 ATGTCTTCAGCCGGCGGGAACTCCGGCGGCGGTAGCGGTAGTGCTGCTGGTTTTGCCTCCGGTGCCCCTCAAAACTATTTCTGCCACCAGTGTAACCAGACTGTCTCCATTTCGCCATCCTCCTCTGATCTCATCTGTCCTAATTGCAACGGTGGCTTTATTGAAGAAGTGGAAAATTCAATCCCTAGCCCCAACCCTAACCCTACTAGTCCCTTTTTTTCATTCTCGTCGGAGTTTGGCGGCGGAAGTAGCGGCTTTCCTCTTATATTCTCATCCGGCGGCAGCAGTGGTGCCGGTGGACCGCTTTTCGATGATCTTTCTGCGCTATTTGGCTCTGGACCTAACCGATCGTCTTCTCCCTTTTCAGACGCTGATGCCTTCAACCCTTTTGCGTTCCTTCAGAACTATCTTCAAACTCTTAGAGCTGGTGGTGCTAATGTACAATTTGTGATAGAGAACTCGGCAGACCCAGGTGGTGGCCTCCGTCTTCCGAGCAATCTCAACCTTGGCGATTACTTTTTCGGCCCTGGTCTTGAGCAATTGATTCAACAGCTTGCGGAGAATGACCCCAACCGATATGGGACACCCCCAGCTTCAAAATCTGCTATTGAGGAGCTGTCTAGTATCAAAATTTCCGAGGAGCTGTTGGCTTCTGATTCATCTCAGTGTGCAGTGTGTAAAGACGAATTTGTGCTTGGGGAAGAGGCGAAACAGATACCGTGCAAACACATTTATCATAAAGATTGCATTTTGCCTTGGTTAGAAATGCACAATTCGTGTCCCGTTTGCCGATATGAGTTACCGACTGATGATCCTGATTACGAGCAAAGGGTTCGTGGGACCTTTGGCTCTGTTCATGTGAATAGAAACCAATCCACAGGGATTGGCGGCTCTGGTGATTCTTCTGAAGGTGGTAATGGCGGTAATGCTGGAGCTGGTGGTGGTATAGCATCTGGAGAAAACCTCCACTCACCGGGAGTAGCTGAGCGGAGGTTTAGAGTTGCTTTGCCATGGCCATTTAGGCAAATTAGTTCCATTGCAGAGACAAGCAATGTTGGGAATGCCAGCAACAGTGGAAATGATTCTGGGGAATCAAATCCTGGAAGTAGGGGAAATCAGAATTTTGAGTCAGAGACCAGACAAGAAGATCTCGATTA 1157 0.4866 MSSAGGNSGGGSGSAAGFASGAPQNYFCHQCNQTVSISPSSSDLICPNCNGGFIEEVENSIPSPNPNPTSPFFSFSSEFGGGSSGFPLIFSSGGSSGAGGPLFDDLSALFGSGPNRSSSPFSDADAFNPFAFLQNYLQTLRAGGANVQFVIENSADPGGGLRLPSNLNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEELSSIKISEELLASDSSQCAVCKDEFVLGEEAKQIPCKHIYHKDCILPWLEMHNSCPVCRYELPTDDPDYEQRVRGTFGSVHVNRNQSTGIGGSGDSSEGGNGGNAGAGGGIASGENLHSPGVAERRFRVALPWPFRQISSIAETSNVGNASNSGNDSGESNPGSRGNQNFESETRQEDLD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01639 385 MobiDBLite consensus disorder prediction 283 305 - -
Bva03g01639 385 SMART ring_2 223 263 IPR001841 -
Bva03g01639 385 MobiDBLite consensus disorder prediction 349 375 - -
Bva03g01639 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 16 351 - -
Bva03g01639 385 MobiDBLite consensus disorder prediction 283 322 - -
Bva03g01639 385 Pfam Ring finger domain 222 264 IPR001841 -
Bva03g01639 385 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Bva03g01639 385 CDD RING-H2_RNF126_like 222 264 - -
Bva03g01639 385 SUPERFAMILY RING/U-box 203 271 - -
Bva03g01639 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 16 351 - -
Bva03g01639 385 MobiDBLite consensus disorder prediction 349 385 - -
Bva03g01639 385 Pfam zinc-ribbon 24 56 IPR039525 GO:0061630
Bva03g01639 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 270 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01639 Bva-Chr3 14975176 14979466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01639 164 282 C3H Transcription Factor Family AT5G01980 48.739 6.85e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01639 K11982 - mnt:21384501 427.943