Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01635 ATGTTTTGTAGGGCACTCGATCAAGATTTCTCACGGTCAAAAGAGCCGAAGATATCACACATTGGGTGCGACGATCAAGTGCAGTTTTCGAAGATGCAAATATTCGTGAAAACCCTCACCGGCAAGACTATTACTCTTGAAGTTGAAAGTTCGGATACCATTGACAATGTGAAGGCAAAGATCCAGGACAAAGAAGGCATCCCACCAGATCAGCAGCGTCTTATCTTTGCAGGGAAGCAGCTTGAGGATGGGCGAACTTTAGCAGATTATAATATCCAGAAGGAGTCTACCCTCCACCTTGTTCTTCGGCTTCGTGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGGAAGACCATTACCCTTGAGGTTGAGAGCTCTGACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAAAGACTCATTTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACGCTTGCTGACTATAACATTCAAAAGGAGTCAACGCTCCACCTTGTTCTGCGGCTGCGTGGTGGAATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGAGACTCATTTTTGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTTTCTGACTATAACATTCAAAAGGAGTCAACGCTCCACCTTGTTCTGCGACTTCGGGGTGGAATGCAGATCTTTGTGAAGACCCTCACTGGAAAAACTATTACCTTGGAAGTTGAGAGTTCTGACACTATAGACAATGTGAAGGCTAAGATCCAAGACAAAGAGGGAATTCCACCAGACCAACAAAGATTGATATTTGCTGGAAAACAGTTGGAGGATGGAAGGACTTTGGCTGATTACAATATTCAGAAAGAATCTACTCTTCACCTTGTTCTGAGACTTCGTGGCGGGATGCAAATCTTTGTGAAGACCCTCACAGGGAAAACTATCACCTTGGAAGTTGAGAGTTCAGATACAATCGACAATGTGAAATCTAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGGCTGATATTTGCAGGAAAGCAGTTGGAGGATGGAAGGACACTGGCCGATTACAATATTCAGAAAGAGTCTACTCTTCACCTTGTTCTGCGTCTTCGTGGTGGCTTTTA 1238 0.458 MFCRALDQDFSRSKEPKISHIGCDDQVQFSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01635 412 CDD Ubl_ubiquitin 260 335 - -
Bva03g01635 412 Pfam Ubiquitin family 34 105 IPR000626 GO:0005515
Bva03g01635 412 Pfam Ubiquitin family 186 257 IPR000626 GO:0005515
Bva03g01635 412 Pfam Ubiquitin family 262 333 IPR000626 GO:0005515
Bva03g01635 412 Pfam Ubiquitin family 110 181 IPR000626 GO:0005515
Bva03g01635 412 Pfam Ubiquitin family 338 409 IPR000626 GO:0005515
Bva03g01635 412 ProSitePatterns Ubiquitin domain signature. 58 83 IPR019954 -
Bva03g01635 412 PANTHER UBIQUITIN 98 265 - -
Bva03g01635 412 SMART ubq_7 108 179 IPR000626 GO:0005515
Bva03g01635 412 SMART ubq_7 184 255 IPR000626 GO:0005515
Bva03g01635 412 SMART ubq_7 260 331 IPR000626 GO:0005515
Bva03g01635 412 SMART ubq_7 32 103 IPR000626 GO:0005515
Bva03g01635 412 SMART ubq_7 336 407 IPR000626 GO:0005515
Bva03g01635 412 SUPERFAMILY Ubiquitin-like 335 411 IPR029071 -
Bva03g01635 412 CDD Ubl_ubiquitin 108 183 - -
Bva03g01635 412 SUPERFAMILY Ubiquitin-like 259 335 IPR029071 -
Bva03g01635 412 ProSiteProfiles Ubiquitin domain profile. 108 183 IPR000626 GO:0005515
Bva03g01635 412 PANTHER - 98 265 - -
Bva03g01635 412 PANTHER - 251 411 - -
Bva03g01635 412 ProSiteProfiles Ubiquitin domain profile. 260 335 IPR000626 GO:0005515
Bva03g01635 412 PANTHER - 178 338 - -
Bva03g01635 412 PANTHER - 31 187 - -
Bva03g01635 412 SUPERFAMILY Ubiquitin-like 107 183 IPR029071 -
Bva03g01635 412 ProSiteProfiles Ubiquitin domain profile. 184 259 IPR000626 GO:0005515
Bva03g01635 412 PANTHER UBIQUITIN 251 411 - -
Bva03g01635 412 ProSitePatterns Ubiquitin domain signature. 286 311 IPR019954 -
Bva03g01635 412 ProSiteProfiles Ubiquitin domain profile. 336 411 IPR000626 GO:0005515
Bva03g01635 412 Gene3D - 336 412 - -
Bva03g01635 412 Gene3D - 260 335 - -
Bva03g01635 412 Gene3D - 184 259 - -
Bva03g01635 412 Gene3D - 25 108 - -
Bva03g01635 412 Gene3D - 109 183 - -
Bva03g01635 412 CDD Ubl_ubiquitin 184 259 - -
Bva03g01635 412 CDD Ubl_ubiquitin 336 411 - -
Bva03g01635 412 ProSitePatterns Ubiquitin domain signature. 362 387 IPR019954 -
Bva03g01635 412 PANTHER UBIQUITIN 178 338 - -
Bva03g01635 412 PANTHER UBIQUITIN 31 187 - -
Bva03g01635 412 CDD Ubl_ubiquitin 32 107 - -
Bva03g01635 412 ProSitePatterns Ubiquitin domain signature. 134 159 IPR019954 -
Bva03g01635 412 ProSiteProfiles Ubiquitin domain profile. 32 107 IPR000626 GO:0005515
Bva03g01635 412 SUPERFAMILY Ubiquitin-like 183 259 IPR029071 -
Bva03g01635 412 ProSitePatterns Ubiquitin domain signature. 210 235 IPR019954 -
Bva03g01635 412 SUPERFAMILY Ubiquitin-like 30 107 IPR029071 -
Bva03g01635 412 PRINTS Ubiquitin signature 194 214 IPR019956 -
Bva03g01635 412 PRINTS Ubiquitin signature 236 257 IPR019956 -
Bva03g01635 412 PRINTS Ubiquitin signature 215 235 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01635 Bva-Chr3 14951019 14953633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01635 336 412 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 1.46e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01635 - K08770 pavi:110774095 738.028