Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01587 ATGGATTCAAGTACATCAGCGGGTGAGCTATTTGCTGTCGCACTAGCTCATGCTTTCTCTCTGATTGCTGCGGTTGCGGCTAGCATGCATGTTTCCGGTGGCCATGTGAACCCGGCGGTGACTTTTGGTGCACTCCTCGGTGGAAGGATCTCTGTCCTACGCGCCATCTACTACTGGATTGCTCAACTTCTGGGTGCTATAGTAGCTTCCATCTTGCTCAGACTTGTCACCGCTGGCatgAGACCTGGAGGTTTCCATACAGGTCCTGGCATTGGCGTAACACATGGGCTAATATTTGAGATAGTGATGACATTTGGATTGATGTACACGGTTTATGGTACGGCCATTGATCCCAAAAGGGGAAGCATAGGCATCCTTGCACCCTTAGCAATTGGGCTAATTGTTGGGGCCAACATTATTGTTGGTTGGCCATTTGATGGAGCATGCATGAACCCAGCTAGGGCTTTTGGGCCTGCTTTAGTGGGCTGGAGATGGAGGCACCACTGGATCTACTGGGTTGGCCCACTTATTGGAAGTGGACTGGCAGCACTCATTTATGAATACATTGTGATCCCAATAGAGCCCCCTCATGCTCACCAACCCTTGGCTCCTGAGGACTACTA 623 0.504 MDSSTSAGELFAVALAHAFSLIAAVAASMHVSGGHVNPAVTFGALLGGRISVLRAIYYWIAQLLGAIVASILLRLVTAGMRPGGFHTGPGIGVTHGLIFEIVMTFGLMYTVYGTAIDPKRGSIGILAPLAIGLIVGANIIVGWPFDGACMNPARAFGPALVGWRWRHHWIYWVGPLIGSGLAALIYEYIVIPIEPPHAHQPLAPEDY 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01587 207 PANTHER AQUAPORIN-8 2 207 IPR034294 -
Bva03g01587 207 Gene3D Glycerol uptake facilitator protein. 1 195 IPR023271 -
Bva03g01587 207 Pfam Major intrinsic protein 5 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01587 207 PRINTS Major intrinsic protein family signature 17 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01587 207 PRINTS Major intrinsic protein family signature 99 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01587 207 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01587 207 PRINTS Major intrinsic protein family signature 169 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01587 207 PRINTS Major intrinsic protein family signature 132 154 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01587 207 SUPERFAMILY Aquaporin-like 4 197 IPR023271 -
Bva03g01587 207 ProSitePatterns MIP family signature. 35 43 IPR022357 -
Bva03g01587 207 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 2 207 - -
Bva03g01587 207 CDD MIP 3 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva03g01587 207 TIGRFAM MIP: MIP family channel proteins 6 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01587 Bva-Chr3 14757919 14758839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01587 4 207 Major Intrinsic Protein MIP AT1G73190 72.727 9.73e-97 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01587 K09873 - gmx:100817450 343.584