Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01556 ATGGATtctaagaagaaaatgattgtGAGATACAAGGAATGCCTTAAAAACCATGCAGCTGCAATTGGTGGAAATGCCACCGATGGGTGTGGTGAGTTCATGCCTGCAGGTGGAGAGCATGAAGGATCAAACCCAGAAGCTCTCATCTGCTCAGCCTGCAATTGTCACAGAAACTTCCacagaaaagaagagattGAATCTGATGATTCCTATGATCACTTCCCTAATGTTGACGAGGCAGCAAAGCCCATTTTGGACCATTTGTCTCCAAAGAAAAGTGGGTCAAATGTATCTGATCAGTTTGATGAGAAGGGTTATGATGAAATGAAGGTAGCTGAGAAGGAGAGAAAGAGGTTCAGAACCAAGTTCACTCAAGAACAGAAGGAGAAGATGCTGAGGTTTGCAGAAAATGCTGGGTGGAGGATACAGAAGCTGGATGAGTCTCTAGTGCAGCAGTTTTGCCAAGAGGTTGGAATCAAGAGAAGAGTCCTCAAAGTTTGGATGCATAACAACAAGAACACTTTTGCCAAGAGAAATCTCATCTCTAGTGCTCCACTAGCTAGCTG 566 0.4187 MDSKKKMIVRYKECLKNHAAAIGGNATDGCGEFMPAGGEHEGSNPEALICSACNCHRNFHRKEEIESDDSYDHFPNVDEAAKPILDHLSPKKSGSNVSDQFDEKGYDEMKVAEKERKRFRTKFTQEQKEKMLRFAENAGWRIQKLDESLVQQFCQEVGIKRRVLKVWMHNNKNTFAKRNLISSAPLAS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01556 188 Pfam ZF-HD protein dimerisation region 9 64 IPR006456 -
Bva03g01556 188 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 5 178 - -
Bva03g01556 188 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 10 63 IPR006456 -
Bva03g01556 188 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 11 63 IPR006456 -
Bva03g01556 188 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 5 178 - -
Bva03g01556 188 Gene3D - 102 177 - -
Bva03g01556 188 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 116 173 IPR006455 -
Bva03g01556 188 SUPERFAMILY Homeodomain-like 105 177 IPR009057 -
Bva03g01556 188 Coils Coil 109 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01556 Bva-Chr3 14530555 14531121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01556 4 178 ZF-HD Transcription Factor Family AT2G02540 45.673 1.35e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva03g01556 ZF-HD_dimer 7.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01556 - - gmx:100793926 243.047