Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01553 ATGGTCGTGAGTGGAGGGAAGCCATTGAAGcgaatgaaaagaagaatcaCCTCTGATTATCACGACTTCCTCACGTTTCCCCCGGCATCATTAACCGGAGCGGAGGATTTCTCCGGCGGGCCTTTCCGGACGAAAGTGCGCTCCTTTCTGTCGAAATACGCTCTGCTGCCGCCGCCGTCAGCTTTGTTCCCTCACCTGCTGACATGGCAGATACCGTTCCGAGTTGGGGACCTTACGGACGGTCCGGAGTCGATCCCGGCGACGGTGTGCCTCGACGTTGTGGAAGAGGATGTGGCCAGATCCAGATCCGTCTACTGCGACCAATGTCGAGTTGTTGgTTGGAGTGGTCATCCAGTATGCGGGAAACGTTACCATTTTATAATCAAGGCTGATGGTAGCAGTATTGGTGGATACCAGAAGCCATGTATGTGCTGTGGAGATATCCTGCATCTCTCGGAGTCCAAGTGCAAATCATGCAACCATGTGACAACATCAGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAAAACACGACACATCTATTGCATGGTGTAGTCCACGCTAATGGTTATGGGCACCTTCTCCGGGTTAATGGTAGAGAAGGGGGCTCAAGAATTGTTTCTGGCTGtgatattatgaatttttgggaTCGCCTCTGCAAGACGCTGGGAGTCAGAAAAGTTACTGTTATGGATGTATCAAAGAAATATGGTCTGGAGTATCGGCTACTCCATGCCATCACAAAGGGATATCCATGGTATGGTGAGTGGGGATATCAATTTGGCTCTGGTAGCTATGGTGTTACACACGAAGTGTATACGTCTGCAATTGAAAGCCTTTCCAATTTACCTTTGACGGTCTTCCGCTCAGAGGGTCAGAAACCTGACTCTTCTTTGCAGAACACTATCTCTTATTACCAGTCTTTATCCAAGCACGAGCTTGTAAATATAAGAGAcctcttttgttttctgatgGGTTTGATTCATGATGCTCGCAAGACTGAATCAAGGGCTGATGATGTCACCTGCAAGAAGCGTCGTTTTAATGCTTCTGGGGCATGTTCATGGGCTAAGAGTGATATAGAACGTGTGGAGGAAGCCATGCTTAGAGTACTTCGTGCAGTGTCTGGGTCCAATTGGGTAAGCTGGCGCTCTCTAAGGGGAGCTGTCTGTAAGGTTGCCTCACCTGAGTTGCTTGATTACTGCCTTGGAGAACTTGGAGGGAAAGCCGTCTGTAGTGGAATGGTTGTTAATAGCCGATGCAATCCTGATACTGGTGCTTTTGAGTACAGACTTGAGGCTAGGAATGATTCTTGCCATGGAACTATAGCAAACAATAATACCTCAGCCTTGAAGTGTCCATCCGAAGACAAGCTTCTAAATgacttgaaatatttatacGAGTCTTTGTTTCATCCACAAATGATGTCAAGCTATGGGCCTGAGGGGATAAAGACTCTTGCAAAGAGCTCTGCTCAGAAACTTATTGACTGCAAGCAGTTTGTAAAGGATTTCAGGCCTGAGATGATGCCAACGACAAATTTGTCTAAAATATGCTTATGGTGTCATATTGAACTTGTGGATGAATCTGAAGAGTTAGGCGTAAACCCTCCCCCAGAATTAATCATCCTACCCTTAAATGCCACGGTGTCTGACATGAAGATTGAAGCGGCGAACGCCTTTCAAAATGTATATATCATGTTTAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAATGGTGTAGAGGATTCCACCCTGGTCAAGCTTTTGCTAGGATCAACTGAATTGGTACATGTCAAAGGAAGATGCATAGGAAAGAATGCATTTTCCAAGTTCCAGATGGAAAGAGGAACTGAGAGGTGGACTGTGGATTGCAACTGCGGCGCTAAGGATGATGATGGGGAGAGAATGCTGGCTTGTGATTTATGTGGAGTGTGGCGACACACAAGATGTTCTGACATTCACGATGCAGATCCCGTCCCTGCTCGGTTTGTTTGCCCAAGATGTCAAAACTCTGACTCAAAACCAAAACCTAATAGCCACTGTAAAGATGAGACTGTGACTAACATTAGTTCTACCGGTAGCTGCTTTGGAAACGGCCTGCCGCTGCCTTCTGATGTTAGGTG 2132 0.4522 MVVSGGKPLKRMKRRITSDYHDFLTFPPASLTGAEDFSGGPFRTKVRSFLSKYALLPPPSALFPHLLTWQIPFRVGDLTDGPESIPATVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYQKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRIVSGCDIMNFWDRLCKTLGVRKVTVMDVSKKYGLEYRLLHAITKGYPWYGEWGYQFGSGSYGVTHEVYTSAIESLSNLPLTVFRSEGQKPDSSLQNTISYYQSLSKHELVNIRDLFCFLMGLIHDARKTESRADDVTCKKRRFNASGACSWAKSDIERVEEAMLRVLRAVSGSNWVSWRSLRGAVCKVASPELLDYCLGELGGKAVCSGMVVNSRCNPDTGAFEYRLEARNDSCHGTIANNNTSALKCPSEDKLLNDLKYLYESLFHPQMMSSYGPEGIKTLAKSSAQKLIDCKQFVKDFRPEMMPTTNLSKICLWCHIELVDESEELGVNPPPELIILPLNATVSDMKIEAANAFQNVYIMFRRFQVDELLGYNGVEDSTLVKLLLGSTELVHVKGRCIGKNAFSKFQMERGTERWTVDCNCGAKDDDGERMLACDLCGVWRHTRCSDIHDADPVPARFVCPRCQNSDSKPKPNSHCKDETVTNISSTGSCFGNGLPLPSDVR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01553 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 678 IPR013083 -
Bva03g01553 710 CDD PHD_MMD1_like 626 671 - -
Bva03g01553 710 Pfam PHD-finger 627 673 IPR019787 -
Bva03g01553 710 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Bva03g01553 710 SUPERFAMILY FYVE/PHD zinc finger 614 675 IPR011011 -
Bva03g01553 710 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 683 - -
Bva03g01553 710 PANTHER OS01G0877500 PROTEIN 1 683 - -
Bva03g01553 710 SMART PHD_3 626 672 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01553 Bva-Chr3 14512931 14518089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01553 86 671 PHD Transcription Factor Family AT5G22260 29.920 1.10e-84 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva03g01553 PHD 2.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01553 - - gmx:100818189 1125.15