Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01552 ATGGAACGTGGTGCCGGAGCTCCGGCGCCGCTCAGTGTCatggaaggaaaagagaaatggAATGATTACAAAGTTGGCTCTTTGCCAACTGTAATGTACATACCCAATTTCATCACAGATAATGAACAGACCTTTCTTCTGAATAATATTTATGGAGCCCCTCAATCCAAGTGGAAGTCATTGAAGAACAGAAGGCTACAAAATTGGGGTGGTGTTGTTCATGAGAAGGGCCTTCTACCTCAAGATTTGCCTCCCTGGCTAACAAATATGACACACAAAATATGTGAAGAATCAGGGTTATTCCCATCACCTATCAATCATGTTCTAATCAATGAATACCTTCCTAACCAAGGCATAATGCCACATCAGGATGGTCCTGCCTATTTTCCAGTAGTAGCGATTCTTTCACTTGGATCTCCTGTTGTCATGGACTTCACTCCCCATTCCAGATTAAAATTGTATGCCACTGATATTACTGACCAAAATTCTGATGAAGGAACTGCTGAGATTGGGGAAGATAAGTTGGTTGATAATCACCGTCCATTTTCTGTCTTGTTGATGCCTCGCAGTTTACTGATATTCAAGGATAATGCATACTCAGATTACTTGCATGGAATAAAAGACAGTGCGGTACATTGCTACGATGGGGCTGTAAATGAAACTGAAGCTTTGAAACACTATGAATCACATCACCCCGTGTTAAGCTCAGAGGAAGCAGAGAAAACAATGGGAAAGGGAGAGtctaaaaatattcaaagaacATCCACTAGAATTTCATTAACTTGCCTTCGAGTTTCTTACTCTTCTGCCACCTTTACTCTAGTCTCACTTCGACCCTTTGCTTCCTCTGACGCCATTTCAACGCTGCTCTCGCGGTGGACCATACTGTCAGCGTCTCGTCcagattttctttctctggtTAAGGCAAATGATGCTTTTGAAGGAATGAATCCTTACTTCTCTGTACTTTATCCAGTGATTCTACATGTGGCGATGCCCGCGATGAAGAAGAATTTTGAACAGACTCGCGTTGGTTCTGTATTCAACAAGTTGGAGAAGCAGCTTGGGGATCCTGTTGACTTCAAACTTCCAGAGTGGTTTAATAAGTGGAAGCCAATGCCCTACACCTTTATAAAGCGCAatatatatctCACAAAGAGGATCAAGAGACgggttgatgatgatgatggcaTATTCTGTGCCTGTACTCCTTCACCTGGTTCTTCAAGTGTATGTGGTAGAGACTGCCAATGTGGGATGCTTCAGTCTAGCTGCTCGTCAAGCTGTAAATGTGGGGATTCTTGTCTCAATAAACCATTCCATAATCGACCTgtgaaaaagatgaaattggtGCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATTAAGCAAGGGGAGTTTGTCATTGAATATGTTGGAGAAGTCATTGATGATAAAACATGTGAAGAAAGACTTTGGGATATGAAACATCGGGGTGAGACAAACTTTTACCTATGTGAAATCAATCGAGATATGGTGATTGATGCAACATATAAGGGAAACAAATCAAGATACATAAATCATAGTTGCTGCCCCAACACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGTATATTTGCAAAACGTGACATAAGGAAGGGCGAGCATCTGACTTATGATTATAAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCATTGTGGTGCTGCTGGGTGCAGGCGTAAGCTGGGAGCCCGGCCCACCAAGCCCAAAACGTCTTCAGATGCTGcattaaaattagttacatATCAGGTGGCTGCGTCATCTCCCAAACTGAAAGTTTGTCACAATAGAGATTTGCATATAGGAAGTTCGAACGTTATTCACCAACAAAATTACAGACGCAATTGCATTGGTGAAGTTATTAGGATAAATCGCCCCACAAATGAGAGTTCCAGGTGTTTCGGGATAATCAAACGTTATGATAAATATACCAATAAACACAAGATCATGTTTGAAGATGGGGGTATTGAATTTCTTGACATGTCCAAAGAAGACTGGGAACTTGTTAGATA 2078 0.3946 MERGAGAPAPLSVMEGKEKWNDYKVGSLPTVMYIPNFITDNEQTFLLNNIYGAPQSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTNMTHKICEESGLFPSPINHVLINEYLPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHSRLKLYATDITDQNSDEGTAEIGEDKLVDNHRPFSVLLMPRSLLIFKDNAYSDYLHGIKDSAVHCYDGAVNETEALKHYESHHPVLSSEEAEKTMGKGESKNIQRTSTRISLTCLRVSYSSATFTLVSLRPFASSDAISTLLSRWTILSASRPDFLSLVKANDAFEGMNPYFSVLYPVILHVAMPAMKKNFEQTRVGSVFNKLEKQLGDPVDFKLPEWFNKWKPMPYTFIKRNIYLTKRIKRRVDDDDGIFCACTPSPGSSSVCGRDCQCGMLQSSCSSSCKCGDSCLNKPFHNRPVKKMKLVQTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWDMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFAKRDIRKGEHLTYDYKFVQFGADQDCHCGAAGCRRKLGARPTKPKTSSDAALKLVTYQVCHNRDLHIGSSNVIHQQNYRRNCIGEVIRINRPTNESSRCFGIIKRYDKYTNKHKIMFEDGGIEFLDMSKEDWELVR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01552 683 Gene3D - 21 270 IPR037151 -
Bva03g01552 683 Pfam SET domain 457 562 IPR001214 GO:0005515
Bva03g01552 683 Pfam 2OG-Fe(II) oxygenase superfamily 65 261 IPR027450 -
Bva03g01552 683 SUPERFAMILY Clavaminate synthase-like 29 262 - -
Bva03g01552 683 CDD SET_ASHR3-like 447 585 - -
Bva03g01552 683 SMART PostSET_3 569 585 IPR003616 -
Bva03g01552 683 ProSiteProfiles AWS domain profile. 395 444 IPR006560 GO:0005634|GO:0018024
Bva03g01552 683 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 368 623 IPR025787 -
Bva03g01552 683 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 343 681 - -
Bva03g01552 683 SUPERFAMILY SET domain 359 575 IPR046341 -
Bva03g01552 683 SMART shorttest3 395 445 IPR006560 GO:0005634|GO:0018024
Bva03g01552 683 PANTHER SET DOMAIN PROTEINS 343 681 - -
Bva03g01552 683 Gene3D SET domain 363 602 IPR046341 -
Bva03g01552 683 ProSiteProfiles Post-SET domain profile. 569 585 IPR003616 -
Bva03g01552 683 ProSiteProfiles SET domain profile. 446 563 IPR001214 GO:0005515
Bva03g01552 683 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 104 267 IPR005123 -
Bva03g01552 683 SMART set_7 446 569 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01552 Bva-Chr3 14499290 14512363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01552 425 581 C2H2 Transcription Factor Family AT2G23740 34.659 2.49e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva03g01552 2OG-FeII_Oxy_2 9.3e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01552 - - jre:109005024 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01552 03 14499290 14512363 Bva03g01552 03 14499290 14512363 ECH