LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva03g01511	GTAGAATTTCTGAAgcaaagtaatatttttctctgtaattgtagaattttttaattttttttacaatatttcaGTGTTAATTTTGAAGGTATCTGTACTCTCTGCAATGGTGGAGATTTGAACGCCTGAACGGCGTCTTTCCAGGAGAACAAGCTCAAGTTGTAGAATTGTACCGTACGGCGTTGCAGCTTTGAAGCATTTGTGAGAAGCGTTTTTTGGGTTGTTGAAGTTTTCTTtgagattgaaatttttttgagctCACATCCCACTGTATCAtttctggttttctttttactacaaagttttatttttaatgcttttttgGGTGTGAGTTTGGaagaagttaaattttttcatggtATGGTTTAAGCATTCGTGAGGTTTTGGATCTTTGTTTTCGGTGATTTAtataaatggaagaaaaagaaagttctgGTTCTGGCCTCGCCGTGAATGGTGGCAAAACCCCAGAGAGCTACCACGTAGCTCCGAGAAATGAAAACGCCGGGCCCCCGGCAGAGGCATCCGCGCCGGCGCCGGTTGGTTTCGCTGGGACGCCCAGTACGgaagtgaagaagaagaggggGAGGCCCAGGAAGTACCGCCCTGACGGGAAACTAGCATGGGCTTTGTCACCTATGCCGATTTCATCTTCAATTCCGTTGACTGGCGAGTTCTCAGATTGGAAACGGGGTAGAGGGCGTCCTGTTGATTCGATCAAAAAGACATATAAGTATGAATACGAAATTACAGGTACAGGTAATGGAATTGCATACTCAGTTGGTGCCAATTTCACACCCCACGTGCTTACAGTTAATACTGGCGAgGATGTTATTATGAAGGTTATGTCCTTCTCTCAACAAGGTTCTCGTGCTATTTGTATTCTTTCTGCAAATGGCACAATTTCAAATGTTACACTTCGTCAACCAACTTCTTTTGGGGGTACTTTAACATACGAGGGAAGGTTCGAGATCCTTTCCTTGTCTGGTTCATTTATGCCAACTGAGAATGGAGTAACAAGGAGCAGATCTGGTGGGATGAGTGTCACTTTGGCAGGTCCAGATGGTCGAGTGGTAGGAGGTGGACTTGCCGGTTTGTTGGTAGCCGCTGGCCCTGTACAGGTTGTCGTCGGCAGTTTTCTTCCCGGTCACCAGCAGGAGCAGAAAGCCAAGAAGCAAAAGGTGGAGCATATAACAACTATAACCTCTACCCATGTTAACGCCATCTCTGATGAAGGAATAGAAGTCAGTTTTGGTGTTCTAAAGCCTATTATGACGCCTGCTGCTTTTCAAGGAGACAGCATTGCCTCTTTTAACAATGTTCAAGCCTCTAGGATCTCTTCGGACGATGATAAAACTCCTTTGCCCGAAAAGGAGTCTAACCTCAGCCAAGCAAATGCTGGGATTCAATGCTA	1414	0.4031	MEEKESSGSGLAVNGGKTPESYHVAPRNENAGPPAEASAPAPVGFAGTPSTEVKKKRGRPRKYRPDGKLAWALSPMPISSSIPLTGEFSDWKRGRGRPVDSIKKTYKYEYEITGTGNGIAYSVGANFTPHVLTVNTGEDVIMKVMSFSQQGSRAICILSANGTISNVTLRQPTSFGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVTLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKAKKQKVEHITTITSTHVNAISDEGIEVSFGVLKPIMTPAAFQGDSIASFNNVQASRISSDDDKTPLPEKESNLSQANAGIQC	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva03g01511	333	MobiDBLite	consensus disorder prediction	1	67	-	-
	Bva03g01511	333	MobiDBLite	consensus disorder prediction	307	333	-	-
	Bva03g01511	333	ProSiteProfiles	PPC domain profile profile.	124	263	IPR005175	-
	Bva03g01511	333	Gene3D	-	129	267	-	-
	Bva03g01511	333	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	7	321	IPR039605	GO:0003680
	Bva03g01511	333	SUPERFAMILY	AF0104/ALDC/Ptd012-like	126	249	-	-
	Bva03g01511	333	Pfam	Plants and Prokaryotes Conserved (PCC) domain	129	242	IPR005175	-
	Bva03g01511	333	CDD	DUF296	128	242	IPR005175	-
	Bva03g01511	333	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3	7	321	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva03g01511	Bva-Chr3	14251028	14255511	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva03g01511	29	290	AT-hook Motif Nuclear Localized (AHL) Family	AT4G25320	57.721	4.11e-92	278

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva03g01511	-		-	gmx:100789179	406.757