Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01505 ATGCCTTCGCTTCCCCTCTCTGATGTCGTTTTTTCTGAGAGCCCCAAAGataaggagaaggagaaaaagaagaagatgaagaaccAGGCTCTAATTGATGCTTCAGAACCTGAAGGATCGGTTGGCAAGAAGAGTAAGAAAACTTCCAAGCTTGGGAGTACTCCGAAGGCGTCTGATTCTGAGGATGAGGGATTTTCGGACAAGaaggtgaagaagaaaaaggagagtAAAAAGCGTAAAGCTTTAGAAACGGAGAATATGATGGATGGGGAGGAAGACAAGAGTGAGACTAGCTCTGAGCTTGTTGAGCCAGAAACCTCGAAGCCGAAGACTGaggagaagaggaagaaaaaaaaggcgAAGCTAGAGGAGCTTGAAGTGGAGGGAGAAGAGGCTGAGAAGGAGGATCCCAATGCAATTTCGAATTTCAGGATATCGGAGCCGCTGAGGGCAAAGTTGAAGGAGAAGGGAATTGAATCGCTGTTCCCCATTCAGGCAATGACTTTCGATACCATTCTCGATGGGTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATTTTAGAATCTTTGACAAATGGTCCGGCAAAAGCATCAAGAAAGACCGGATATGGGAGGGCACCAAGCGTTCTTGTGCTTTTACCAACCAGGGAATTGGCAAATCAGGTGTTTGCTGATTTTGAGGTTTATGGAGGGGCACTTGGATTGAGTTCTTGTTGTTTATATGGTGGGGCCTCATATCAAGCTCAAGATATTAGGCTTAAGAGAGGTGTTGATATTGTTGTTGGAACACCAGGCCGCATAAAGGATCATATAGAAAGGGAAAATATTGACCTGAGCCAACTAAGGTTCCGTGTCCTTGACGAGGCTGATGAGATGCTGAAGATGGGTTTTGTTGAAGATGTTGAACTCATTCTTGGTAAAGTCAGGGATACCAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAACATATTGCtgcaaaatttctaaaacCTGATAAGAAAACTGCTGACCTTGTTGGGAATGAGAGAATGAAGGCTAGCATCAACGTTAGGCATATTGTTATGCCATGTTCTGGTTCTGCCAGGTCCCAGCTTATACCTGACATTATTCGCTGTTACAGCAGTGGAGGTCGGACAATTATATTCACTGAGACAAAAGAGTCTGCATCTGAGCTTGCAGGGTTATTGCCTGGAGCAAGAGCTCTGCATGGTGACATACAGCAGTCACAACGAGAGGTTACCTTGTCTGGCTTCAGATCTGGGAAATTCATGATATTGGTGGCTACAAATGTGGCAGCTCGGGGTTTAGACATTAATGATGTTCAGTTAATTATCCAGTGTGAGCCTCCACGTGATGTAGAAGCCTATATACATCGATCTGGGCGGACAGGAAGAGCAGGTAATAGTGGAGTTGCTGTCATGCTTTATGATCCAAGAAGGTCAAATGtatcaaaaatagaaagggAATCAGGTGTGAAATTTGAGCATATATCTGCTCCCCAGCCTGCTGATATTGCCAAAGCTATTGGTGGGGAAGCTGCTGAAATGATAACCCATGTGTCTGATAGTGTCATTCCTGCATTCAAGGCTGCTGCTGAGGAGCTTCTGGACAACTCTGGTTTATCAGCTGTTGACTTACTCTCAAAAGCTCTGGCTAAGGCTGttGGTTATActgagataaagaaaagatCAATTCTGACTTCCATGGAGAACCATGTCACATTACTTCTTGAGATTGGAAGGCCTATCTATTCCCCATCTTTCGCATATGGAGTCCTGAGGAGATTCTTGCCCGAGGAGAAGGTTGAGGCAGTCAAGGGGCTTGCTCTCACTGCTGATGGAAATGGCGTTGTATTTGATGTTGCAGCCGAAGATTTAGATACATATCTTGCCGGTCAGGAAAATGCAGCTAATGTGAGCTTAGAGGTGTTGAACGCATTGCCGCGGTTGCAAGAAAGAGACCAATCAAGAGGGGGCAGATTTGGTGGTCGTGGTGGGTTTGGTGGTAACAGGTTTGGTGGACGGGGTGGCAGAAATGGCGGATTTTCGAATCAGAGGAATAATGGAGGCGGAAGAGGTGCTGGTGGCAACAGGGGGCCAAGGAGATGGTA 2159 0.4349 MPSLPLSDVVFSESPKDKEKEKKKKMKNQALIDASEPEGSVGKKSKKTSKLGSTPKASDSEDEGFSDKKVKKKKESKKRKALETENMMDGEEDKSETSSELVEPETSKPKTEEKRKKKKAKLEELEVEGEEAEKEDPNAISNFRISEPLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRAPSVLVLLPTRELANQVFADFEVYGGALGLSSCCLYGGASYQAQDIRLKRGVDIVVGTPGRIKDHIERENIDLSQLRFRVLDEADEMLKMGFVEDVELILGKVRDTSKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNERMKASINVRHIVMPCSGSARSQLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMILVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSNVSKIERESGVKFEHISAPQPADIAKAIGGEAAEMITHVSDSVIPAFKAAAEELLDNSGLSAVDLLSKALAKAVGYTEIKKRSILTSMENHVTLLLEIGRPIYSPSFAYGVLRRFLPEEKVEAVKGLALTADGNGVVFDVAAEDLDTYLAGQENAANVSLEVLNALPRLQERDQSRGGRFGGRGGFGGNRFGGRGGRNGGFSNQRNNGGGRGAGGNRGPRRW 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01505 719 SMART ultradead3 157 369 IPR014001 -
Bva03g01505 719 Gene3D - 364 589 IPR027417 -
Bva03g01505 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 351 IPR014001 -
Bva03g01505 719 MobiDBLite consensus disorder prediction 78 127 - -
Bva03g01505 719 Gene3D - 43 351 IPR027417 -
Bva03g01505 719 Pfam DEAD/DEAH box helicase 162 339 IPR011545 GO:0003676|GO:0005524
Bva03g01505 719 MobiDBLite consensus disorder prediction 1 134 - -
Bva03g01505 719 Pfam GUCT (NUC152) domain 572 667 IPR012562 GO:0003723|GO:0004386|GO:0005524
Bva03g01505 719 MobiDBLite consensus disorder prediction 670 719 - -
Bva03g01505 719 CDD GUCT_RH7_like 579 664 - -
Bva03g01505 719 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 522 IPR001650 -
Bva03g01505 719 MobiDBLite consensus disorder prediction 12 31 - -
Bva03g01505 719 Pfam Helicase conserved C-terminal domain 385 483 IPR001650 -
Bva03g01505 719 MobiDBLite consensus disorder prediction 56 70 - -
Bva03g01505 719 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 295 303 IPR000629 -
Bva03g01505 719 SUPERFAMILY RNA-binding domain, RBD 576 659 IPR035979 GO:0003676
Bva03g01505 719 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 695 - -
Bva03g01505 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 495 IPR027417 -
Bva03g01505 719 SMART helicmild6 406 483 IPR001650 -
Bva03g01505 719 CDD SF2_C_DEAD 366 492 - -
Bva03g01505 719 Gene3D - 590 661 - -
Bva03g01505 719 Coils Coil 108 135 - -
Bva03g01505 719 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 58 695 - -
Bva03g01505 719 CDD DEADc 149 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01505 Bva-Chr3 14213047 14218630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01505 175 525 Eukaryotic Initiation Factors Gene Family AT1G72730 30.618 1.73e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01505 K16911 - jre:108998595 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01505 03 14213047 14218630 Bva03g01505 03 14213047 14218630 ECH