Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01478 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGGATAGAAAACAAGACCAATCGGCAAGTGACCTTCTCAAAGCGCAGGAATGGATTGCTCAAGAAAGCCTATGAGCTTTCTGTGCTGTGCGATGCTGAAGTTGCCCTTATCATTTTTTCTGGCCGTGGCAAGCTTTTCCAGTTCAGCTCCTCTGaCATAAACAGAATCATTGAGCGGTATCGACAATGCTGTTTCATCTCACAAGCAAGCAACATGGTTGAAGATGAACCTCagAACTTGCAACAGGAgctgttaaaattaaaaatcaaatatgaatCTCTTGAGCGTACACAAAGGAATTTGCATGGAGAGGACCTTGAACCACTTAGCATGAACGAGTTGCAGAGTCTTGAGAAACAGCTAGAAAGAACACTTTCACAAGCTAGACAGCGAAAGACACAGGCGATGTTGGAACGACTGAATGATTTACGCGAAAAGGAACACAAGCTTGCAGAGATAAACAAAGAACTCAAGTCCAAGCTTGAGGAAGTAGATGAATATGCTCAAATATTCGAAAGCCATTTGGTCGCCAGAAACAATAATCGTTCTAAGGTGCAAGCTGTACAGGCCAATTGTTTTGAGTCTGGGACAACAGTGCCAATACACGGTTATCTGCACActcaaacattttcaaaaggaaaagaaattgatgagaGGACAGATGGTGGAGATAGCAGTGATAGCAACAATGGGTGGCTGCTTTG 731 0.409 MGRGKVVLERIENKTNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLFQFSSSDINRIIERYRQCCFISQASNMVEDEPQNLQQELLKLKIKYESLERTQRNLHGEDLEPLSMNELQSLEKQLERTLSQARQRKTQAMLERLNDLREKEHKLAEINKELKSKLEEVDEYAQIFESHLVARNNNRSKVQAVQANCFESGTTVPIHGYLHTQTFSKGKEIDERTDGGDSSDSNNGWLL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01478 243 MobiDBLite consensus disorder prediction 219 243 - -
Bva03g01478 243 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 232 - -
Bva03g01478 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Bva03g01478 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Bva03g01478 243 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva03g01478 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva03g01478 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva03g01478 243 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Bva03g01478 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bva03g01478 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva03g01478 243 Coils Coil 120 147 - -
Bva03g01478 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva03g01478 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva03g01478 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva03g01478 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva03g01478 243 Coils Coil 149 179 - -
Bva03g01478 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01478 Bva-Chr3 14050058 14055504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01478 1 243 MADS-box Gene Family AT2G45650 49.012 5.76e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva03g01478 K-box 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01478 K09264 - gmx:100793681 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01478 03 14050058 14055504 Bva03g01478 03 14050058 14055504 ECH