Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01462 ATGGACTTTGATGGGGGAAATAAGCGAGTGTTTCAGAGGATCGGTGGAGCTACGGCAGATGCCAAATACCAAAAAGTTTGCTACCATTGGCAAGCAGGGAAGTGCAATAGGCATCCATGCCCGTTTCTGCACGGTGAATTACCTCCTTCAAATGTCAACGGGATGTCTTCGAAACGGCCTCATGGCCAAGGGTCTTCTGCTGATTCTGGTTTCCCGGGTCCACGGAGGAGTCCAAATTTTAGTGGCGCTTCAACGTGGGGACGGGCTCATGGTGGGGGAGCTAATAGAATAGTTAGGAAGGCTGAGAAAGTTTGTAATTATTGGGTTCAGGGGAGTTGTAGTTTTGGAGACAGGTGTAAGTTCCTTCACTCTTGGAGTTTAGGTGATGGTTTTTCGTTAATGACACAGCTTGAAGGGCATCAAAAGGTTATAAGTGGAATCGCCCTGCCATCTGGATCTGATAAGCTCTATACTGGAAGCAAAGATGAGACTGCAAGGATTTGGGACTGCCAGTCTGGAAAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATACCGAATGTTGTTAAGGCATGGAATGTTCAAACGTCAACGGAGCTAAGTCTGAGTGGTCCTGTTGGACAAGTATATACTTTGGTTGTGGGTGGTGATATGCTCTTTGCTGGTACGCAGGATGGGTCTATATTAGTATGGAAGTTCAATGTAGTAACCAATTGCTTTGAGCCAGCTGCATCACTTAAAGACCATTCCCTTGCTGTTGTTTCTTTAGTTGTCGGAGCTAATAGGCTATACTCTGGTTCCATGGATCATACAATAAAAGTTTGGAGCCTTGAAAATTTGCAGTGTTTACAGACACTGACAGAGCACACCTCTGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTTTTATCTTGCTCATTGGACAAAACAGTGAAGGTTTGGGTTGCTAACGAAAATGGAAACTTGGAAGTGACATATACTCATAACGAAGAACATGGTGTACTTACCCTTTGTGGGATGCATGATTCCCAGGGCAAGCCTATTTTATTGTGCTCTTGCAATGATAATACCGTGCGCCTCTATGATTTGCCGTCGTTTGCAGAGAGAGGTAAGATTTTGTCCAAAGAAGACATTCGAGCAATACAGATAGGTCCCGGTGGCATATTCTTCACCGGTGATGGAACAGGGCAAGTCAAAGTGTGGAATTGGTTAGCAGAGCCAACTACTTCTGCACAGTA 1283 0.4497 MDFDGGNKRVFQRIGGATADAKYQKVCYHWQAGKCNRHPCPFLHGELPPSNVNGMSSKRPHGQGSSADSGFPGPRRSPNFSGASTWGRAHGGGANRIVRKAEKVCNYWVQGSCSFGDRCKFLHSWSLGDGFSLMTQLEGHQKVISGIALPSGSDKLYTGSKDETARIWDCQSGKCIAVINLGGEVGCMISEGPWVFVGIPNVVKAWNVQTSTELSLSGPVGQVYTLVVGGDMLFAGTQDGSILVWKFNVVTNCFEPAASLKDHSLAVVSLVVGANRLYSGSMDHTIKVWSLENLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWVANENGNLEVTYTHNEEHGVLTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKILSKEDIRAIQIGPGGIFFTGDGTGQVKVWNWLAEPTTSAQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01462 427 Gene3D - 228 426 IPR015943 GO:0005515
Bva03g01462 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 169 - -
Bva03g01462 427 Pfam Zinc finger domain 105 123 - -
Bva03g01462 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 299 IPR001680 GO:0005515
Bva03g01462 427 SMART WD40_4 334 377 IPR001680 GO:0005515
Bva03g01462 427 SMART WD40_4 380 417 IPR001680 GO:0005515
Bva03g01462 427 SMART WD40_4 253 290 IPR001680 GO:0005515
Bva03g01462 427 SMART WD40_4 293 330 IPR001680 GO:0005515
Bva03g01462 427 SMART WD40_4 209 246 IPR001680 GO:0005515
Bva03g01462 427 SMART WD40_4 130 169 IPR001680 GO:0005515
Bva03g01462 427 PANTHER - 1 425 IPR044715 -
Bva03g01462 427 Gene3D - 125 218 IPR015943 GO:0005515
Bva03g01462 427 SUPERFAMILY WD40 repeat-like 131 418 IPR036322 GO:0005515
Bva03g01462 427 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Bva03g01462 427 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Bva03g01462 427 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Bva03g01462 427 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Bva03g01462 427 SMART c3hfinal6 22 46 IPR000571 GO:0046872
Bva03g01462 427 SMART c3hfinal6 101 125 IPR000571 GO:0046872
Bva03g01462 427 MobiDBLite consensus disorder prediction 51 87 - -
Bva03g01462 427 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 425 - -
Bva03g01462 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 178 IPR001680 GO:0005515
Bva03g01462 427 Pfam WD domain, G-beta repeat 295 329 IPR001680 GO:0005515
Bva03g01462 427 Pfam WD domain, G-beta repeat 133 169 IPR001680 GO:0005515
Bva03g01462 427 Pfam WD domain, G-beta repeat 259 290 IPR001680 GO:0005515
Bva03g01462 427 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Bva03g01462 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 293 - -
Bva03g01462 427 SUPERFAMILY CCCH zinc finger 100 124 IPR036855 GO:0046872
Bva03g01462 427 Gene3D - 95 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01462 Bva-Chr3 13878672 13881899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01462 125 301 Eukaryotic Initiation Factors Gene Family AT2G46290 25.253 7.08e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva03g01462 WD40 0.0024 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01462 - - gmx:100792089 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01462 03 13878672 13881899 Bva03g01462 03 13878672 13881899 ECH