Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01460 ATGGCATCTGCAACTCTCTATCTCGCTCCTCCTATTCGAATCCGTGCTTCCAAACAAACACTCGCCTCCTTCACTGCTCCATCCCCTTTCCACCCATTGTATTCACTCCCTTCATCCCCACTTCCCCTGCGCTCCACATTTCACAGGGCTCCCTTAAGGACTAAAACAATTCCACTTGCCTATGTAACTGGACCTGCATCGGATCCAATTTTCAGCGAATCAGACCCGAAGATAGACAGTTCGGATTCTCTGCCGGAAAAGGACGAGCCGCCGAGTGTGATAAACTGGGGGATTATGTGGAAGCTTCTGATGAAGCACAAGATGAGGCTCGCTCTTTGCACTGTAGCTCTCATTGGTTGCACCAGCTGTACCCTGTCGATGCCCCTCATTTCTGGGCAACTTTTTGAAGTCCTTATTGGTTCCAGACCAGGGTCTCTATGGAGGATGCTTGGTGAGTTTGCAGTGCTGTATGCCCTGGAGCCAATTTTAACTATTATCTTTGTTATAAACATGAACATAGTGTGGGAGAAGGTTATGTCAACATTAAGAGCTCAGATCTTCGGAAGGATATTGATTCAGAAGGTGGAATTTTTTGACAGATATAAGGTTGGTGAGCTCACTGGTTTGTTGACATCTGATTTGGGTTCTCTCAAAGATATTGTAAGTGAGAATGTTTCCAGGGATCGTGGATTCAGGGCACTATCTGAGGTCCTTGGGACATTATGCATTCTTTTTGCTCTATCCCCTCAACTTGCACCAATCCTAGGTGTTCTAATGCTCTcagtttctctttttgttgCTGTCTACAAGAGATCCACTTTGCCGGTTTTTAAAGCACATGGAATGGTCCAAGCATCTCTATCTGACTGTATAGCAGAAACCTTTTCGGCCATTCGAACAGTAAGGTCCTTTGGTGGTGAGAAGCGTCAATTATTTACATTTGCTAACCAGGTTCTTTCTTACCAAACAAGCGGGATAAAGCTTGGAACTTTTAAATCTATAAATGAATCCATCACTAGAGTTGCGGTTTATGTTTCTCTGATggcattatatttttttggaggAAGCAAAGTTAAGGCGGGTGAACTCTCTTTTGCCATTTGGGCAGCATTTGTTGGATATACTTTCACATTAACATTTGCTGTTCAAGGACTGGTTAATACTTTGGGAGATCTTCGTGGTTCTCTTGCTGCTGTTGAGAGAATCAACTCTGTATTGTCTGGGGTTGAAATTGATGAAGCCCTTGCTTATGGCTTAGAAAGAgaactaaaacaaaaagaagtgGATGATGAGAACTATAAATTGTTATTCTCTATTAATTCTGCCGAGAGATACCAAAGCAGATATTTGCATTACATGTCAGCATTGAAATCATCGAGCAATTTGTTTAGCTTAGCTTGGTCTGgagatatttttcttgaagATGTGTATTTTTCTTATCCTTTAAGGCCAGATGTGGAAGTCTTAAGCGGCTTAAATCTAAGACTAAACTGTGGAACTGTAACTGCACTGGTGGGTCCTAGTGGTGCAGGCAAAAGTACAATAGTACAGCTGTTGGCTCGATTTTATGAGCCAGCAAGAGGTCGTATAACTGTCGCAGAAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCACGGGTTGTCTCCATTGTCAATCAAGAGCCTGTTCTGTTTTCGGCTTCTCTTGGAGAAAATATTGCGTATGGGCTTCCAGATGATGATGTTTCTAGAGATGACGTGATTAAGGCAGCGAAAGCTGCCAATGCTCATGACTTCATAATTTCTCTTCCGCAGGGCTATGACACGCATGTTGGTGAGCGTGGAGGACTACTTAGTGGAGGACAGAGGCAGAGAATTGCTATTGCCCGAGCAATACTGAAGAATGCCCCAATACTTATACTTGATGAGGCCACCAGTGCCTTAGATGCAGTCAGTGAGCGCTTGATTCAGGATGCTCTTAACCATTTGATGAAGGGAAGGACAACATTAGTGATAGCTCACCGATTAAGCACAGTTCAAAATGCCCATCAAATTGCGCTTTGTTCTGATGGGAGGGTTGCAGAACTTGGAACCCACTTTGAGTTATTGGCTAAGAAGGGCCAATATGCTTCATTGGTTGGCACTCAAAGGCTTGCATTTGAATA 2147 0.4229 MASATLYLAPPIRIRASKQTLASFTAPSPFHPLYSLPSSPLPLRSTFHRAPLRTKTIPLAYVTGPASDPIFSESDPKIDSSDSLPEKDEPPSVINWGIMWKLLMKHKMRLALCTVALIGCTSCTLSMPLISGQLFEVLIGSRPGSLWRMLGEFAVLYALEPILTIIFVINMNIVWEKVMSTLRAQIFGRILIQKVEFFDRYKVGELTGLLTSDLGSLKDIVSENVSRDRGFRALSEVLGTLCILFALSPQLAPILGVLMLSVSLFVAVYKRSTLPVFKAHGMVQASLSDCIAETFSAIRTVRSFGGEKRQLFTFANQVLSYQTSGIKLGTFKSINESITRVAVYVSLMALYFFGGSKVKAGELSFAIWAAFVGYTFTLTFAVQGLVNTLGDLRGSLAAVERINSVLSGVEIDEALAYGLERELKQKEVDDENYKLLFSINSAERYQSRYLHYMSALKSSSNLFSLAWSGDIFLEDVYFSYPLRPDVEVLSGLNLRLNCGTVTALVGPSGAGKSTIVQLLARFYEPARGRITVAEEDVRTFDKSEWARVVSIVNQEPVLFSASLGENIAYGLPDDDVSRDDVIKAAKAANAHDFIISLPQGYDTHVGERGGLLSGGQRQRIAIARAILKNAPILILDEATSALDAVSERLIQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRVAELGTHFELLAKKGQYASLVGTQRLAFE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01460 715 CDD ABC_MTABC3_MDL1_MDL2 471 710 - -
Bva03g01460 715 Pfam ABC transporter transmembrane region 111 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g01460 715 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 53 713 - -
Bva03g01460 715 CDD ABC_6TM_TAP_ABCB8_10_like 113 402 - -
Bva03g01460 715 Pfam ABC transporter 489 640 IPR003439 GO:0005524
Bva03g01460 715 Gene3D ABC transporter type 1, transmembrane domain 81 409 IPR036640 GO:0005524|GO:0016021
Bva03g01460 715 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 53 713 IPR039421 -
Bva03g01460 715 Gene3D - 469 712 IPR027417 -
Bva03g01460 715 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 394 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g01460 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 710 IPR027417 -
Bva03g01460 715 SUPERFAMILY ABC transporter transmembrane region 99 407 IPR036640 GO:0005524|GO:0016021
Bva03g01460 715 SMART AAA_5 498 692 IPR003593 -
Bva03g01460 715 MobiDBLite consensus disorder prediction 68 88 - -
Bva03g01460 715 ProSitePatterns ABC transporters family signature. 612 626 IPR017871 GO:0005524
Bva03g01460 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 471 709 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01460 Bva-Chr3 13862357 13868826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01460 468 715 Calmodulin-binding Proteins AT2G36910 52.988 1.71e-72 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01460 K05657 - gmx:100791034 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01460 03 13862357 13868826 Bva03g01460 03 13862357 13868826 ECH