Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01455 ATGCTCTCTGTCTTCGCTTCCACTTCCATATATATGGCAAAACCCACATGCAAAATGGCTCAGTACTGCAATTCACTTTCCCACCCAAAATCAGAACAAGATCTTATTCCAAAATCccacctttttattttcaatcataTAGTGATACGAATCAGTGGAGTGGAAGTCAATCGGCAAAACAGAGCAAGTCAGTTCGAGTTCAAAGGAGGAAACTTTTCGGTGATTATTATGTTTACTTTCACTCATTTTTCTGACCCACTTATGATAAAGTCGGAGTATTTGTTGGACACGTCATCGCCGGTGTCGGACGGTTGCGGCGGCGGTCGTGGGATGACATTATCGGACGATGAGTTGTTGTTGGCTTCGAGGAATCCGAAGAAGCGTGCGGGGAGGAAGAAGTTCAGGGAGACTCGGCACCCGGTGTACAGGGGTGTGAGGAGGAGGAACTCCGGCAAGTGGGTGTGCGAAGTGCGCGAGCCTAATAAGAAAACTAGGATTTGGCTCGGTACTTTTCCAACGGTGGAAATGGCAGCTCGGGCACATGACGTGGCGGCGATTGCGCTACGTGGTCGGTCTGCTTGTCTTAATTTTGCGGACTCGGCGTGGCGGTTGACAATTCCGGCGTCGACGGAGCCGAAGGATATTCAGAAGGCGGCAGCGGAAGCTGCGGAGGCATTCCGTCCCAGGGCGGATTCAGAGGCGGTAAGCACGGTGGCAGAAGCAGAGCCAGAGGAGGAGGAAAATACGTTCTATATGGATGAAGAAGCGAGGCCAGAAATGGGATTGCTGAGGGAGATGGCTCTCATGTCCCCACAACATTGCTTGGGAGATCAGTGGCATGGAGCTGACGTGGATGTTGATGATGCTGAGGTGTCATTATGGAGTTATtcgattta 896 0.4955 MLSVFASTSIYMAKPTCKMAQYCNSLSHPKSEQDLIPKSHLFIFNHIVIRISGVEVNRQNRASQFEFKGGNFSVIIMFTFTHFSDPLMIKSEYLLDTSSPVSDGCGGGRGMTLSDDELLLASRNPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTVEMAARAHDVAAIALRGRSACLNFADSAWRLTIPASTEPKDIQKAAAEAAEAFRPRADSEAVSTVAEAEPEEEENTFYMDEEARPEMGLLREMALMSPQHCLGDQWHGADVDVDDAEVSLWSYSI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01455 298 CDD AP2 142 200 IPR001471 GO:0003700|GO:0006355
Bva03g01455 298 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Bva03g01455 298 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Bva03g01455 298 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Bva03g01455 298 SUPERFAMILY DNA-binding domain 141 200 IPR016177 GO:0003677
Bva03g01455 298 Gene3D AP2/ERF domain 141 199 IPR036955 GO:0003700|GO:0006355
Bva03g01455 298 ProSiteProfiles AP2/ERF domain profile. 141 198 IPR001471 GO:0003700|GO:0006355
Bva03g01455 298 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 98 298 - -
Bva03g01455 298 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 98 298 IPR045277 GO:0003700
Bva03g01455 298 SMART rav1_2 141 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01455 Bva-Chr3 13837589 13838485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01455 77 296 AP2-EREBP Transcription Factor Family AT4G25470 57.265 1.53e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva03g01455 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01455 - - gmx:547622 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01455 03 13837589 13838485 Bva04g01103 04 7344834 7345828 ECH
Bva03g01455 03 13837589 13838485 Bva03g01455 03 13837589 13838485 ECH