Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01453 ATGGAGAGAATCAAATCAATGTTCCCACTTTTCATGAGCAACCCAGTTTTTCTGAGTGCCAAGCCAAGCAGACCCTTTAAGGTTTCAATCAAAGCCCCTCCTCCAGATTTCGATTACAGGCTAGAAATTGTGCAGGATTCAAGAGACGCCATAGCTGAATTTCACCCTGAGTTGCTTGATTTGGCTGAGAATGGGAGCTTGGTTTTGATCGAGAAGAAGCGGTTCGGGCCTGTGCCGGCATGGAGGTCTGAGTTTGTGGAGCCTGAAAAGATTTGGTTGGTAGGAACGAACCATATCTCTCAGGAGTCGCCTGTGGTTGTCGAGCGAGTCGTGCGAGCAATCAAACCAGATAATGTGGTTGTTGAGCTCTGCAGAAGCAGAGCTGGGATCATGTATGCTTCTGCTGATAGAGAACTTGGCAAACAGTTAAGGTCTAACATGTTTTCTTTGAGCGGTAGTGGTTTTTTTGGTGCAGTTGGTCGTAGCATAAACCTGGGTGGTCAAACTGCATTAGCATTACGGTTACTCCTGGCGGCTTTTTCATCAAAGCTATCTTCTGATATTAATCGACCTTTTGGTGATGAGTTCCGTGCTGCTCGAAAAGTGTCCGAAGAAGTTGGTGCACAAATTGTTCTGGGAGATCGACCAATTGAAATAACACTTCAAAGAACCTGGAATGCTTTGAAATGGACTGAGAAATTAAGTTTAGTTCTATCAGTTATTCGTGGCATAACATCAAAATCTGACATTTCTACAAATAAGATCGAGGTTACTTCTCTAACTATGGAATCAAGTTTAGATGATGGTTCATTTCAGCTTTATGAGCAACTTAGTTTTTCATATCCATCACTCTTGCAGCCTCTAGTACATGAAAGAGACACTTATCTTGCATGGTCATTGAAGCGAAGTAAAGCTGTGAATAACTGTAAAACGGTGGTGGGTGTCATAGGAAAAGGCCACATGAATGGTGTAATATATGCACTGGTATCTGATCTTGGGGATTTGAGGTTTCGGGATCTTGTTggcaaaatttcatataatggTGGTTCTAATTCTAATGGCTGGATTGAAGACCTTGCCAAGAGTTTACTTGCCAAGGTAGCGGCGAAAGGAAGATCTGGGAACTGTTGGATTAAGGGTTTCTGTTGTAAACGGAAATTTGTTTTCGATTCTAGGTTTTCTATCAGAGTTGAAGGGGATATGAAGCCAATTTTCTgtggaaattttgaatatgatGCTAGGCAGTCTGATCTGGAGCGGCTTTTTAAAAGATACGGGAAGGTTGATAGGGTGGATATGAAGTCTGGTTTTGCTTTTATCTATATGGAAGATGAGCAAGATGCTGAGGATGCCATCCGTGCTCTTGATCGGGTAGAGTTTGGTCGGAAGGGACGCAGACTTCGTGTGGAATGGACAAAGCATGAACGTGGCATTAGAAGGCCTGGTGGTCCAAGAAGATCATCAACTAATGTGAGGCCATCAAAGACCTTATTTGTGATTAATTTTGATACATACCATACCAGGACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATTGTCAATGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGAATCAGAGGATGATGCCGCCAGAGCCTTGGAAGCTACAAATATGAGCAAGTTAATGGATCGAGTTATTTCTGTTGAATTTGCTGCGaaggatgatgatgatagGCGGAATGGATATAGCCCTGAGAGAAGTTATGCTCGTCCACGTGATAGAAGTCGTGATAGAAGACGATCACCCAGTCCTTATCGTAGAGACCGGGGTAGCCCTGATTATGGCCATGCTGCTAGTCCATATAGGCGAGACCGGGGTAGCCCTGACTATGGTCAGGGCCGCAGCCGAAGTCCCTCTCGGAGAGGTCGAGCTAGCCCCCATTATGGTCGCGGAAGCCGCAGTCCACATAGAAGAGAGAAGGATGCTTCTGATCATGTACATGATTCCAGCCATAGTCCTTATCATAAAGAGCAGATGAGAACTGACCGTGGCAACTCTCCCTTCCATAGTCCTAATGGACGAGAGAAGAGAAGCCCTCAAAATGGCCGTGGTTCCAGCCATAGTCCTCGCGAAATGGAGAGGGCTAGTCCTGAAAATGCTCATGGCTCTAGGCGTAGTCCTGATGCAAAAGGGAATTCGAGTCCTTACAATGGTTATGCAGGAAGCCCAAATTCTATGCCTGAGCCCAGGGACAGTCCCAACTACGATGCTCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAGTCTCCCGCTGCAGAAGAATG 2306 0.4428 MQGFAFIYMEDEQDAEDAIRALDRVEFGRKGRRLRVEWTKHERGIRRPGGPRRSSTNVRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVNVRIRRNFAFVQYESEDDAARALEATNMSKLMDRVISVEFAAKDDDDRRNGYSPERSYARPRDRSRDRRRSPSPYRRDRGSPDYGHAASPYRRDRGSPDYGQGRSRSPSRRGRASPHYGRGSRSPHRREKDASDHVHDSSHSPYHKEQMRTDRGNSPFHSPNGREKRSPQNGRGSSHSPREMERASPENAHGSRRSPDAKGNSSPYNGYAGSPNSMPEPRDSPNYDAPESPMHERYRSQSPAAEE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01453 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 41 IPR000504 GO:0003723
Bva03g01453 335 Gene3D - 1 55 IPR012677 -
Bva03g01453 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 126 IPR000504 GO:0003723
Bva03g01453 335 MobiDBLite consensus disorder prediction 135 335 - -
Bva03g01453 335 MobiDBLite consensus disorder prediction 135 190 - -
Bva03g01453 335 MobiDBLite consensus disorder prediction 317 335 - -
Bva03g01453 335 MobiDBLite consensus disorder prediction 244 266 - -
Bva03g01453 335 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 208 - -
Bva03g01453 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 133 IPR000504 GO:0003723
Bva03g01453 335 SUPERFAMILY RNA-binding domain, RBD 3 57 IPR035979 GO:0003676
Bva03g01453 335 SUPERFAMILY RNA-binding domain, RBD 46 139 IPR035979 GO:0003676
Bva03g01453 335 MobiDBLite consensus disorder prediction 212 243 - -
Bva03g01453 335 Gene3D - 56 143 IPR012677 -
Bva03g01453 335 MobiDBLite consensus disorder prediction 267 285 - -
Bva03g01453 335 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 208 - -
Bva03g01453 335 MobiDBLite consensus disorder prediction 286 301 - -
Bva03g01453 335 CDD RRM2_AtRSp31_like 63 132 - -
Bva03g01453 335 SMART rrm1_1 63 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01453 Bva-Chr3 13810788 13813050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01453 4 135 Eukaryotic Initiation Factors Gene Family AT3G16380 27.338 9.76e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01453 K12893 - gmx:100781534 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01453 03 13810788 13813050 Bva04g01107 04 7404968 7410413 ECH
Bva03g01453 03 13810788 13813050 Bva03g01453 03 13810788 13813050 ECH