Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01439 ATGAGATTCAAACCTAGACCTTACGAGCAATACCTAGATTTAGgagaaaagaaaacaaatataaaacgAGAGAAAGCCATTGACTTTCTGGTTACCTCTGAGTCACTATCCCAGAGAGAGAAAGCGTGGAAGGATCTGAAAATCCATTACTTTCTTGGCTGTGCAACAGACTATTTGTTTGGCCTTTTTACTTTTGCTTACTGTCAAATTAAAAGGAGTAGTGAGAACAGTAGCGGTGGGGGTGCAAGAGTTGTGGCTAATATTTCTCCATATAACCATTTCATGCCCAGTGGTTCTTCCGTTGTCGAGCCACTTCTTCATTCGCCATCTATTTCAAGTTCAATGCATAATTCCTCcgctttctctttctccacTCAAAGGAAAATGGAGGGCCCTGGTGAGATGGCTCTAATTGGGGAAAATTTCGATCCTAGTTTGGGAGGGAGGATGAGGGATGAAGGTTATGAGAGCCGTTCGGGAAGTGATAACTTTGAAGGCGCTTCAGGTGATGATCAGGAAGCTGGTGATGATCAGCagcagaggaagaagaaatatcaTAGGCACACTCCACACCAGATTCAAGAGCTTGAATCGTTCTTCAAGGAGTGTCCTCATCCTGATGAAAAGCAAAGGATGGAACTGAGCAGGAAGCTTGGCTTGGAGAGTAAGCAAGTCAAATTCTGGTTTCAGAATAGGCGAACCCAAATGAAGACTCAACTTGAACGACATGAAAACGTAATTCTGAgacaagaaaatgataaactgCGAGCTGAAAATAGTGTGATGAAGGAAGCCATGGCAAATCCGGTGTGTAACGGCTGTGGTGGCCCAGCCATTCCTGGACAAATTTCATTTGAGGAGCACCAGATGAGGATTGAAAATGCTCGCCTGAAGGATGAACTGAACCGCATATGCGCTCTTGCAAACAAGTTCATAGGCAGGCCAATTTCATCCTTGGCCAATCCCATGGCTCTTCCGGGTCCAAATGCTGCTTTAGAACTCGCCATTGGAAGGAGTGGACTCGGTGGTTCAAGTCCTCTGCCAATGGGACTTGATTTGGGAGATGGAGGCCTGAGCACTCCACCTCCAATGCCTGGGATTAGATCACCAATGGGATTGATGGAAAGTGAAGTCCAGCTTGAACGATCCATGGTCATTGAGCTTGCATTATCTGCTATGGaggaattaattaagatgTCTCAGGCAGATAGCCCTCTTTGGGTTAAGAGTTTTGGCGGGGAGAAGGAGGCACTGAACCATGACGAATATGCAAggatatcttcttcttttgttggcCCAAAACCTGCTGGTTATGTAACTGAAGCTACCAGAGAAACTGGCGTAGTAATCATCAACAGTTTGAGCCTTGTGGAAACATTGATGGATGCGAATCGATGGGTGGAGATGTTTCCATTCATGATTGCTAGAGCTGCCACCCTTGAAGTCATATCACATGGCATGGCTGGAACCAGAAATGGTGCTTTACATGTGATACATGCTGAGGTTCAACTGCTTTCTCCTTTTGTCCCTGTTCGGCAATTGAGATTCCTGCGGTTCTGCAAGCAGCATGCTGAAGGTGTATGGGCTGTTGCTGATGTTTCAATTGACATTGGCCGTGATCCTGCCAATGGAAGCCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGTTGTGTTATACAAGATATGCCTAATGGTTACTCTAAGGTTACTTGGGTTGAGCATTCACAGTATGATGAGACTATTGTCCACCAACTCTACCGTCCTTTGCTTAGTTCCGGTATTGGTTTCGGTGCTCAGAGGTGGATGGCCACTCTCCAAAGGCAATGTGAATGCTTAACATTCCTGATGTCTCCTTCCAGTGAAGATCACATAGCAGGCATGAGCCAAGCTGGTAGAAGAAGCATGCTGAAGCTAGCACAACGTATGACCGAAAACTTCTGTTCCGGGGTCTGTGCATCGTCTGTACGCAAGTGGGACAGCCTTCAAGTTGGGAATTTGGGCGATGACATCAAAGTTATGACCCGCAAGAACGTGGATGATCCTGGTGAGCCCCAAGGTATTGTTCTCAGTGCTGCAACTTCTGTTTGGATGCCGGTGTCACGGCAAAGGCTGTTCAACTTCCTGCGAGACGAGCGGGCGCGAAGCGAGTGGGACATTCTGTCCACCGGTGGACTAATGCAAGAGATGGTCCACATTGCCAAGGGACAAACACATGGAAATTGCGTCTCTCTACTTCGTGCGAGCGCTGTGAATGCCAACGAGACGACAATGCTAATTCTGCAAGAGACATGGACAGACAGCTCGAGCTCAATGGTTGTCTATGCACCGGTGGACGTCCAATCCCTGAACGTTGTCATGAGCGGTGGCGATTCTATGTATGTTGCTCTGTTGCCTTCCGGATTTGTTATTCTTCCTGACGGCCAACCCGGCTCCGGCTATGGCGGCGCGCTAAACAATTGCAACGGGAGTCTACTGAAGACCGGCAACGATGTTGGCGGCGGAGATGGTGGTTGCCTTCTCACAGTTGGGTTCCAAATTCTGGTGAATAGCTTACCCTCTGCTAAACTCACGGTTGAGTCAGTTGAGACAGTGAACAACCTTATCTCATGCACTATCCAAAAAATCAAAGCTGCTCTTAGAGTTCCATG 2648 0.4558 MRFKPRPYEQYLDLGEKKTNIKREKAIDFLVTSESLSQREKAWKDLKIHYFLGCATDYLFGLFTFAYCQIKRSSENSSGGGARVVANISPYNHFMPSGSSVVEPLLHSPSISSSMHNSSAFSFSTQRKMEGPGEMALIGENFDPSLGGRMRDEGYESRSGSDNFEGASGDDQEAGDDQQQRKKKYHRHTPHQIQELESFFKECPHPDEKQRMELSRKLGLESKQVKFWFQNRRTQMKTQLERHENVILRQENDKLRAENSVMKEAMANPVCNGCGGPAIPGQISFEEHQMRIENARLKDELNRICALANKFIGRPISSLANPMALPGPNAALELAIGRSGLGGSSPLPMGLDLGDGGLSTPPPMPGIRSPMGLMESEVQLERSMVIELALSAMEELIKMSQADSPLWVKSFGGEKEALNHDEYARISSSFVGPKPAGYVTEATRETGVVIINSLSLVETLMDANRWVEMFPFMIARAATLEVISHGMAGTRNGALHVIHAEVQLLSPFVPVRQLRFLRFCKQHAEGVWAVADVSIDIGRDPANGSPFMSCRRLPSGCVIQDMPNGYSKVTWVEHSQYDETIVHQLYRPLLSSGIGFGAQRWMATLQRQCECLTFLMSPSSEDHIAGMSQAGRRSMLKLAQRMTENFCSGVCASSVRKWDSLQVGNLGDDIKVMTRKNVDDPGEPQGIVLSAATSVWMPVSRQRLFNFLRDERARSEWDILSTGGLMQEMVHIAKGQTHGNCVSLLRASAVNANETTMLILQETWTDSSSSMVVYAPVDVQSLNVVMSGGDSMYVALLPSGFVILPDGQPGSGYGGALNNCNGSLLKTGNDVGGGDGGCLLTVGFQILVNSLPSAKLTVESVETVNNLISCTIQKIKAALRVP 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01439 882 CDD homeodomain 182 239 IPR001356 GO:0003677
Bva03g01439 882 SMART HOX_1 181 243 IPR001356 GO:0003677
Bva03g01439 882 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 127 880 IPR042160 -
Bva03g01439 882 CDD START_ArGLABRA2_like 382 610 - -
Bva03g01439 882 Gene3D - 168 254 - -
Bva03g01439 882 ProSitePatterns 'Homeobox' domain signature. 214 237 IPR017970 GO:0000981|GO:0006355
Bva03g01439 882 ProSiteProfiles START domain profile. 378 614 IPR002913 GO:0008289
Bva03g01439 882 SUPERFAMILY Bet v1-like 380 611 - -
Bva03g01439 882 Gene3D - 387 608 IPR023393 -
Bva03g01439 882 MobiDBLite consensus disorder prediction 136 190 - -
Bva03g01439 882 SUPERFAMILY Homeodomain-like 168 239 IPR009057 -
Bva03g01439 882 Pfam START domain 387 611 IPR002913 GO:0008289
Bva03g01439 882 ProSiteProfiles 'Homeobox' domain profile. 179 239 IPR001356 GO:0003677
Bva03g01439 882 SMART START_1 387 611 IPR002913 GO:0008289
Bva03g01439 882 SUPERFAMILY Bet v1-like 638 876 - -
Bva03g01439 882 Coils Coil 233 268 - -
Bva03g01439 882 Pfam Homeodomain 182 237 IPR001356 GO:0003677
Bva03g01439 882 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 127 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01439 Bva-Chr3 13682307 13690361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01439 79 879 Homeobox Transcription Factor Family AT3G61150 56.968 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva03g01439 START 2.8e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01439 K09338 - gmx:100785102 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01128 08 5796033 5801133 Bva03g01439 03 13682307 13690361 ECH
Bva11g01309 11 13402151 13407425 Bva03g01439 03 13682307 13690361 ECH
Bva03g01439 03 13682307 13690361 Bva03g01439 03 13682307 13690361 ECH