Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01434 ATGGCTCCGCCGCCTCCGGCGGAAAACAACGGCGAATCCACCGCTGGTGATTCTCAGAGATCCATTCCGACGCCGTTTCTCATTAAAACTCATCAGCTCGTTGACGATCAAGCGATAGATGATGTCATATCGTGGAACGAAGATGGATCCAGTTTCATCGTCTGGAACCCGACGGTTTTTGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAATAATTTCTCTAGCTTCGTTCGGCAGCTTAACACCTATGGATTCAGAAAGGTTGTACCTGACCGATGGGAATTCTCGAACGAGTGTTTTCGCAGAGGCGAGAAACGGCTTCTTTGTGAGATTCAGCGTCGGAAAATTTCAACAACGGCAGGGACGGCGGCAACTGCTACCGTAGCAGTTCCGGCGCCGGTGACGTTGACTGCGATACCAACGGCTATGCCGATCATATCACCTTCAAACTCCGGGGAGGAGCAGGTGATTTCGTCGAATTCATCGCAGACTATAGCTCCGGCAGACCTGCTGGACGAGAACGAGAGGTTGAGAAAAGAGAATGTTCAGTTGACGAAGGAACTGGCAGAGATGAGATCTCTCTGTAACAATATATTCACTCTGATGTCGAACTACGCTAATAACCAAACGGAGACGGTTGCGCAAGGTAAAGAGAGCGGTTTCACGGCAGCGAGACCTCTTGATTTGATGCCAGCGAAGCGGAGCTCCGGTGAGGAGGCGGAGGCGGCGATGCCGATGGCGGTGGACGAGAAGAATCCGAAGCTGTTCGGGGTGGCTATTGGCGGGAAGCGAGCGAGAGAGGGTGGAGGAAGAGCAGCTGAGGACGAAACAGTGTTGAGCCTGTATCAGCCGGGACCTGCGGAGGTGAAATCAGAGCCGTTAGATTGCGAGAACCGTCGCGATAATCAGGAAACGCCGTGGCTCAATCAATGCCATATGGCGAATCAGAGAGTGTGCAATTG 965 0.5202 MAPPPPAENNGESTAGDSQRSIPTPFLIKTHQLVDDQAIDDVISWNEDGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISTTAGTAATATVAVPAPVTLTAIPTAMPIISPSNSGEEQVISSNSSQTIAPADLLDENERLRKENVQLTKELAEMRSLCNNIFTLMSNYANNQTETVAQGKESGFTAARPLDLMPAKRSSGEEAEAAMPMAVDEKNPKLFGVAIGGKRAREGGGRAAEDETVLSLYQPGPAEVKSEPLDCENRRDNQETPWLNQCHMANQRVCN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01434 321 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g01434 321 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g01434 321 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g01434 321 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 306 IPR027725 -
Bva03g01434 321 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g01434 321 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Bva03g01434 321 MobiDBLite consensus disorder prediction 1 21 - -
Bva03g01434 321 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 10 306 - -
Bva03g01434 321 Coils Coil 175 195 - -
Bva03g01434 321 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g01434 321 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva03g01434 321 Gene3D - 18 116 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01434 Bva-Chr3 13639819 13641519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01434 2 321 HSF AT5G62020 50.448 2.33e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva03g01434 HSF_DNA-bind 5.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01434 K09419 - gmx:100812267 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01434 03 13639819 13641519 Bva03g01434 03 13639819 13641519 ECH