Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01421 ATGGGTGTGAAGCATTTGTGGGATATCCTAGAATCCTGCAAGAAAACAGTTCCACTTCACCATCTCCAGAACAAGAGGCTGTGCATAGATCTCTCATGTTGGATGGTGCAACTCCAGAAGGTGAGCAAATCACACTCTTGTCTGAAGGAGAAAGTCTACCTCAGGGGTCTCTTTCACCGCATTAGAGCACTTATTGCTTTGAATTGCAGCCTGATTTTTGTTACAGATGGATCAATTCCTGCTATTAAATTGTCTACTTATAGGCGTCGCTTAAACTTAAACTCTGGAAAAGAGGTAGCACAAAATGAAAGCAACTTACAGAATATTTCCTCATTACGGAGAAACATGGGATCTGAGTTTTCTTGCATGATAAAAGAGGCTAAAGCCTTGGGGTCGGCTCTTGGCATCCTCTGTTTGAATGGGATTGAGGAAGCTGAAGCACAATGTGCTTTGTTGAACTATGAACTTTTATGTGATGGATGTTTTAGTTCAGATTCAGATATCTTCCTTTTTGGTGCAAGGACAGTATATAGGGATATCTGCCTTGgAGATGGTGGTTATGTTGTTTGCTATGAGATGGCTGACATTGAAAGACAACTTGGATTTGGAAGGGACTCATTGATTGCTCTTGCCTTACTTCTTGGCAGTGACTATTATCAAGGAGTATATGGTCTGGGTCCTGAATCTGCTTGTCAAATAGTTAAATCATCTGGGGACAAATTTGTGCTTCAGAAAATGGCTTCTGAAGGGCTGCACtttgtgaagaaaatgaaaggtgGAAAGAAACTGGGGAAAGTTTTGAAGAGccacaacaaagaaaatatactgGCCCACAATATGAAAGTGAAAAATGGAGATGAGACTCATTCTCAAAGGGATGATGACTTCTTGCAAGTGATCAATGCTTATATGAAGCCAAAATGTCACCTGGCAGATTCTGATACTGTGCAGAGGGCTCTTGCTCATTATCCATTTCAACATGGTAAACTTCAGCAGACATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAGTATATTCTTCCAAAGATTGCTGAAAGAGATTTACGGCGATTTGCCAATTTGCGTTTGACTTCATCAGAACTGGGAGTGCAGCTTCCCTTACATGAGATCCCTGTCAAGTGTCCTGTGTCAGAAATCATCAAGCGCCGGAAGGTTCAAGGTAGGGAATACTATGAGGTTTCCTGGAAAGAAATGCATGGACTTAAAACTTCAATTGTACCCGCAAATCTTTTAGAAagTGCCTGTCCTGAGAAGATTTCCGAGTTTGAGGAGAGAAAAGCTCTAgggaagaaacaaaatattcagAAAAGAAGACCAAAGAAAACTGAAACTACATCTTCTGTAGCTGAACTTGATCTGAAACTCAAGAATCTGTTGCTGGATATCAATCTGCAAGACTGTGCTGCTCACAGTGCCTCTGGTTCGTCAGGACAGGTGTTAAGAGATACAGCTGCTAGCTCTATGGCTGAAGCTGATCCGATTAGCAAAGACTTACTGCATGATGTAGAACTAGTGACATGGAACCAGAGTAACAGCAATATATCAAGCAATGAGGCTGATTCTGGGACAGCTGAAAGTGAGGTCATTGATCTTCTTAGCCCTTCCCCGGTTAAACAATCCCATACTTCCTCCAAATGCCAACAATTGAGCGATCAACGTACTGAAGTGATAAATTTGAGTGACTCAGAAGATGAGATGCTATCTGATTCTGAACACGAGAGCAAAGCAAAGGAGTTGAGATTGTTCCTAGCAAGTATTCGAAATGACATCTATTA 1805 0.4022 MGVKHLWDILESCKKTVPLHHLQNKRLCIDLSCWMVQLQKVSKSHSCLKEKVYLRGLFHRIRALIALNCSLIFVTDGSIPAIKLSTYRRRLNLNSGKEVAQNESNLQNISSLRRNMGSEFSCMIKEAKALGSALGILCLNGIEEAEAQCALLNYELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIERQLGFGRDSLIALALLLGSDYYQGVYGLGPESACQIVKSSGDKFVLQKMASEGLHFVKKMKGGKKLGKVLKSHNKENILAHNMKVKNGDETHSQRDDDFLQVINAYMKPKCHLADSDTVQRALAHYPFQHGKLQQTCAEFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSELGVQLPLHEIPVKCPVSEIIKRRKVQGREYYEVSWKEMHGLKTSIVPANLLESACPEKISEFEERKALGKKQNIQKRRPKKTETTSSVAELDLKLKNLLLDINLQDCAAHSASGSSGQVLRDTAASSMAEADPISKDLLHDVELVTWNQSNSNISSNEADSGTAESEVIDLLSPSPVKQSHTSSKCQQLSDQRTEVINLSDSEDEMLSDSEHESKAKELRLFLASIRNDIY 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01421 601 SMART xpgineu 132 202 IPR006086 GO:0004518
Bva03g01421 601 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Bva03g01421 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Bva03g01421 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 222 IPR006084 -
Bva03g01421 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 152 172 IPR006084 -
Bva03g01421 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 131 148 IPR006084 -
Bva03g01421 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Bva03g01421 601 CDD PIN_GEN1 2 200 - -
Bva03g01421 601 Gene3D - 2 201 - -
Bva03g01421 601 Pfam XPG I-region 135 217 IPR006086 GO:0004518
Bva03g01421 601 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 491 IPR006084 -
Bva03g01421 601 SUPERFAMILY Chromo domain-like 385 437 IPR016197 -
Bva03g01421 601 SUPERFAMILY PIN domain-like 2 217 IPR029060 -
Bva03g01421 601 SMART xpgn3 1 97 IPR006085 GO:0004518
Bva03g01421 601 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 491 - -
Bva03g01421 601 Gene3D - 383 451 - -
Bva03g01421 601 Gene3D - 203 281 - -
Bva03g01421 601 CDD H3TH_XPG-like 205 239 - -
Bva03g01421 601 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 202 364 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01421 Bva-Chr3 13567800 13575594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01421 1 238 Core DNA Replication Machinery Family AT5G26680 24.314 8.97e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01421 K15338 - gmx:100806919 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01421 03 13567800 13575594 Bva03g01421 03 13567800 13575594 ECH