Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01417 ATGGGGTGCAAGGCAGTGGATAAGGCGAAGCCAAAGCACAGGAAGGGCCTATGGTCCCCTGAAGAGGACAATAAGCTCAGAAACCATATCCTCATGCATGGCCATGGTTGCTGGAGCTCAGTTCCCATTAAGGCAGGATTGCAGAGGAATGGAAAGAGCTGCAGACTAAGGTGGATCAACTACCTAAGGCCAGGACTGAAGAGAGGGATGTTCAGCAAGCAAGAAGAAGAGACAATTCTGACCCTTCACCACATGATGGGCAACAAGTGGTCTCAGATAGCACAGAATTTGCCAGGAAGAACTGACAATGAGATTAAGAACTACTGGCACtcatatttgaaaaagaaagtggcCAAAGCTGAGGAAATTGAAGCTCTAAAGCAAACTCAGTATACCAGCTCAAGTTCTGATACAATGAATTCTTCATATTCTTCTCAGAAACCGGCAACTCGAGTTCCAAACACTGATCATTCTTCTCAACAGACTTATGATAACTTCAACAAACAGGCTTATCCAAGCTCCTTACCCAAACTGTTATTTGCTGAGTGGCTTTCATCAGATTATGTACATGGTGGCAGCTCCGCAAATTCATATGACCCTTTAGCCTTGAAGAATGGATTTGATCAAAGCTCAAATTTCCAGGAAGCTGGAATGTATGGTATCTCAGAAGGGATCTATGGAATTGGAGCCACTCTAACTCATGCTTCAGCAACTGAGATGTTCAATTCACAAGTCAAGTTTTCCAATCAAATGGCAAATGGGTTCATCCATTGTGTCCCTGGGGCTAATTTAAGCAGTAATTTCAGCATGAATAATAATGATGTAATGTACATATG 836 0.4199 MGCKAVDKAKPKHRKGLWSPEEDNKLRNHILMHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMFSKQEEETILTLHHMMGNKWSQIAQNLPGRTDNEIKNYWHSYLKKKVAKAEEIEALKQTQYTSSSSDTMNSSYSSQKPATRVPNTDHSSQQTYDNFNKQAYPSSLPKLLFAEWLSSDYVHGGSSANSYDPLALKNGFDQSSNFQEAGMYGISEGIYGIGATLTHASATEMFNSQVKFSNQMANGFIHCVPGANLSSNFSMNNNDVMYI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01417 278 CDD SANT 71 113 IPR001005 -
Bva03g01417 278 CDD SANT 18 62 IPR001005 -
Bva03g01417 278 Gene3D - 70 147 - -
Bva03g01417 278 MobiDBLite consensus disorder prediction 129 163 - -
Bva03g01417 278 MobiDBLite consensus disorder prediction 1 20 - -
Bva03g01417 278 PANTHER MYB TRANSCRIPTION FACTOR 1 271 - -
Bva03g01417 278 Gene3D - 15 67 - -
Bva03g01417 278 SMART sant 67 115 IPR001005 -
Bva03g01417 278 SMART sant 14 64 IPR001005 -
Bva03g01417 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Bva03g01417 278 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Bva03g01417 278 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva03g01417 278 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Bva03g01417 278 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Bva03g01417 278 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Bva03g01417 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva03g01417 278 PANTHER MYB DOMAIN PROTEIN 55 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01417 Bva-Chr3 13532248 13533993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01417 8 184 MYB Transcription Factor Family AT3G48920 54.494 3.88e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva03g01417 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01417 K09422 - gmx:778167 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01417 03 13532248 13533993 Bva03g01417 03 13532248 13533993 ECH