Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01416 ATGGGTAGGACACCTTGTTGTGATAAACATGGAGTGAGGAAAGGAGCTTGGACTCCTGAAGAAGACGAAGCCTTAGTTCAGTACATCAACAAGCATGGGCATGGTAGTTGGCGGACAGTCCCCAAGGAAGCAGGCCTCCTTAGATGTGGGAAAAGTTGTCGGCTACGGTGGATAAACTATCTTCGTCCTGACATCAAGCGTGGCCCTTTCACTGCTGAAGAAGATAATACCATTATTCAACTTCATGCCATACTAGGCAACAGGTGGGCTGCCATAGCTTCCCAACTGCCAGGAAGAACAGACaatgaaattaagaattaCTGGAACACCCATCTTAAGAAGCGCTTCCATCCCCCAGGTCATGCCAGAGGGACACCACTGCCATCTTTCGGTCCTGATCAAGGTAATGTCAAATCCGAATCTCCTACTACGCGTCACATGGTACAGTGGGAAAGTGCTAGAGTTGAGGCAGAGGCAAGGCTGTCAATGGAATCCTCATTGCTTAATTCATGGTCAAGCAAGACTTGCTCTGATTTCTATCTTCAACTTTGGAATTCCGAGGTTGGAGAATCATTTCGCATGATCAAGGGAACAGATGTCTCACAGACATCATCGTCCACAAAATTAGAGTCATGCTCAGATGTCTCGTTGCAGGTGGAAAACAATGGAGCTGGTGCCTTACTCAACATCATTCAAGAACAAACAATCAGCAAGTCAAAGCGCGAAGAAGACATTATTGTGTCAGAGTCAAGCTCTTACGATCTTAATAACTCAGATTCTGCATTGAAGTACCTGCTAGATATTCCTGATGGTGGTATAGGATTCTTAGAAGGACAGGCAGATAGTTGTTG 851 0.4524 MGRTPCCDKHGVRKGAWTPEEDEALVQYINKHGHGSWRTVPKEAGLLRCGKSCRLRWINYLRPDIKRGPFTAEEDNTIIQLHAILGNRWAAIASQLPGRTDNEIKNYWNTHLKKRFHPPGHARGTPLPSFGPDQGNVKSESPTTRHMVQWESARVEAEARLSMESSLLNSWSSKTCSDFYLQLWNSEVGESFRMIKGTDVSQTSSSTKLESCSDVSLQVENNGAGALLNIIQEQTISKSKREEDIIVSESSSYDLNNSDSALKYLLDIPDGGIGFLEGQADSC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01416 283 CDD SANT 69 112 IPR001005 -
Bva03g01416 283 Gene3D - 14 66 - -
Bva03g01416 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva03g01416 283 CDD SANT 16 61 IPR001005 -
Bva03g01416 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva03g01416 283 MobiDBLite consensus disorder prediction 132 146 - -
Bva03g01416 283 Gene3D - 69 115 - -
Bva03g01416 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 277 - -
Bva03g01416 283 MobiDBLite consensus disorder prediction 118 146 - -
Bva03g01416 283 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva03g01416 283 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva03g01416 283 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva03g01416 283 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva03g01416 283 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 277 - -
Bva03g01416 283 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva03g01416 283 SMART sant 13 63 IPR001005 -
Bva03g01416 283 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01416 Bva-Chr3 13526068 13529452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01416 1 282 MYB Transcription Factor Family AT3G61250 56.902 1.16e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva03g01416 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01416 K09422 - gmx:100807142 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01416 03 13526068 13529452 Bva03g01416 03 13526068 13529452 ECH