Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01396 ATGGCGAACAAGAGGCAGCGATTAGCTCGGAAAAGATTCAAAACCGAACACCCTGAAGTGTTCCCCAAACCAGAGCCAACACCTCCAAAAGACCcagacaagaagaagaagaaaaaacgtCCATTCAAGCGGAAGAAGACAGAATCCAATGAACTCGGCGTCACCAAAAAACCCTTTAAAAAGATTTCCAAAAAACACCCACTTAGAGTTCCTGGCATGAAGCCTGGTGAAAGCTGTTTCATTTGCAAAGGCAAAGACCATATTGCTAAATTTTGTACTAAAAAAGCTGAATGGGAGAAAAATAAGATATGTTTGCGATGTCGAGAGCGTGGTCATAGAGCCCAGAACTGTCCTCAGGTGAATGATAGCACGGAGGATTCCAAACACTGCTATAATTGTGGAGAAATTGGGCACTCACTTGCAAAATGTCCACAGCCTCTTCAAGAAGGGGGGACAAAATTTGCTGTTTGCTTTGTCTGTAATGAACAAGGACACTTGAGCAAAAACTGCCCTAAAAACACTCGTGGCATTTATCCAAAggGTGGTTGTTGTAAAATATGTGGTGGTGTGACGCATTTGGCGAAAGATTGTCCTGACAAGGGGAAAAAAGGGCCCGTTTCTTCCAATCGACGCATAAACTCAACATTTGGAACTGAAGAAATGCCCAGTGCTCAGGTTACCAAATTTGTTAGCGGGGATGATCTTGAAGATGACTTCGGGACAGATGAGATCAGTGGTGCCGACAAGGACAAGTCCACCAAATCACAAGACAGTAAGAGGAAGAAGGGTCCCAAAGTTGTGAATTTTAGCTA 812 0.4236 MANKRQRLARKRFKTEHPEVFPKPEPTPPKDPDKKKKKKRPFKRKKTESNELGVTKKPFKKISKKHPLRVPGMKPGESCFICKGKDHIAKFCTKKAEWEKNKICLRCRERGHRAQNCPQVNDSTEDSKHCYNCGEIGHSLAKCPQPLQEGGTKFAVCFVCNEQGHLSKNCPKNTRGIYPKGGCCKICGGVTHLAKDCPDKGKKGPVSSNRRINSTFGTEEMPSAQVTKFVSGDDLEDDFGTDEISGADKDKSTKSQDSKRKKGPKVVNFS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01396 270 Gene3D - 73 123 - -
Bva03g01396 270 SUPERFAMILY Retrovirus zinc finger-like domains 150 200 IPR036875 GO:0003676|GO:0008270
Bva03g01396 270 Gene3D - 124 177 - -
Bva03g01396 270 MobiDBLite consensus disorder prediction 198 270 - -
Bva03g01396 270 MobiDBLite consensus disorder prediction 1 68 - -
Bva03g01396 270 SUPERFAMILY Retrovirus zinc finger-like domains 103 145 IPR036875 GO:0003676|GO:0008270
Bva03g01396 270 MobiDBLite consensus disorder prediction 207 225 - -
Bva03g01396 270 SMART c2hcfinal6 183 199 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 SMART c2hcfinal6 78 94 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 ProSiteProfiles Zinc finger CCHC-type profile. 104 119 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 ProSiteProfiles Zinc finger CCHC-type profile. 157 172 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 MobiDBLite consensus disorder prediction 12 32 - -
Bva03g01396 270 MobiDBLite consensus disorder prediction 242 264 - -
Bva03g01396 270 Pfam Zinc knuckle 156 172 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 Pfam Zinc knuckle 129 145 IPR001878 GO:0003676|GO:0008270
Bva03g01396 270 PANTHER OS04G0555800 PROTEIN 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01396 Bva-Chr3 13389800 13392977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01396 104 200 C2H2 Transcription Factor Family AT5G20220 28.696 1.25e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01396 03 13389800 13392977 Bva03g01396 03 13389800 13392977 ECH