Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01383 ATGTCTGAATCGGAGGAAGAAAATCCTGAACTTGCTCCCACGTCAAAGCCGCCGGAGGATCCTGGGTGTGTCATGGAATTCGATCTCGACCTGGAAAGTTCCTGGCCCTTTGATCAGAATCCCTTTGAGTCCAACCCCATGTCTCCGTCTCTCATCGCTCCCTCGTCTGAGCAACCTTTTTCTCCTCTCTGGGCTTTCTCAGATGTAGACGACGACAAGCACGCAAGAGTTTCGGCATCAGCTTTCTCCGATTACAATAGATTGTTCTCCTGCAATTCAAATTCAACGCCTGAAGGGACAACAGAAAATGatgatgttaaaaaaattttgtcaccCCTTGTGGCTTTTCCGTTGTTAGAAAATCCTGATGGGTATTATCTAATCAAGGAAAGGATGACACAAGCACTCCGCAACTTCAAAGAGTTGACCGAACAGAATGTCCTGGCTCAGGTTTGGGCACCTGTTAGGAATGGGAATCGGTATGTGCTTACAACTTCAGGGCAACCCTTCGTTCTTGATCCACATAGTAATGGACTCAATCAGTATAGAACAGTCTCTCTGACGTACATGTTTCCTGTGGATGGGGAGAATGATGGAATTGTGGGACTACCAGGTCGTGTTTTTCAGCAGAAGTTACCAGAGTGGACTCCCGATGTTCAGTATTATTCTAGGAAAGAGTATCAACGCAGAAATCATGCTCAGCACTTCAATGTTCATGGAACCTTGGCTTTGCCTGTTTTTGAACCTTCTGGACAGTCATGTATTGGTGTGCTGGAGCTGATAATGACTTCTCAGAAGATTAACTATGCTCCGGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAACTTGAGGAGCTCAGAAATTTTGGACCATCCAAACACTCAGATTTGTAATGAAGGACGCCAAAATGCATTAGCAGAGATTTTGGAGATATTGACGGTGGTGTGTGAAACTCATAAATTACCTCTGGCCCAAATATGGGTTCCTTGCAGGCATCGCAGTGTTCTCGCCCACGGTGGTGGTCTGAAGAAGAGCTGCTCTAGCTTCGATGGTAGCTGTATGGGACGAGTTTGCATGTCAACAAGTGATGTAGCATTCTACATCATAGATGCTCATATTTGGGGTTTCCGAGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGTAGGGCATATTTGTCCCACAACATGTGCTTCTGTGGAAACATTACCCACTTCTGCAAAACTGACTATCCCTTGGTGCATTATGCTCTCATGTTTGGGATAACCAGTTGTTTTGCAATCTGTTTAAGAAGCAGTCATACTGAAAATGATGATTATATACTAGAATTTTTTCTGCCTCCAAGGATAATAGATTTTTATGAACAGAAGACATTGTTGGGATCCATATTGGCAACAATGAAACAACATTTCCAGAGTCTTAAGATTGCTAATGGTGCAGAACTTGAGGAGTATGGTTCGATTGAAATCATTGAAGCTACAAATGAAAGTGTTTACTCAAGGTTTGAATCAATTCCAATTAGTCAATCTGCCAACTCACCTCCTGGACCTGCCATCTCACTGAAGAGGGGGGAAATGGTGCCGCTAGATTCATCAGAACAACAAATAATGATGTACTTTGATGACATAAAAGGTGAAGGCACTCTCGTTGATAGTACTGGTGGAAATGTTGATCAGGTCTCTTCCTTGGAAaccaaaaacataaagaaaccCGCAGAGAGAAAACGTGGAAAAACTGAGAAATCAATTAGTCTCGAAGTTTTGCAACGACATTTTGCTGGGAGTCTTAAAGACGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAAATAAACAAGGTTAACCGTTCCCTGTCCAAGCTGAAGCGAGTAATTGAATCTGTGCATGGTGCTCAAGGGGCATTTGGTTTAAATTCTCTAAATACAAGCCCACTACCAATTGCCGTTGGCTCCTTTCCTGAGCCTTCAAACAGGTTCAACCAACAAAGCTCACTAAGCACTGGACCATTAGAAACTCAGATAAAAGAGAATGAATTAGATTTCTTTCAATTACCAGAAATGAACAGACAGGTGGGTGTGGAAGATCAATTCCTTGGAAGAAGAGTTGGAAGTCCAGTGAAAGTGACTCATAAAAAAGTTGGGTCCCCTCAGGAATTCAGTAAAGGCCCAAACAGGTCTGCAACAAGGAGCGGCTCAAGTGAAGATAGCGCAAATCCTACTTCTCATGGCTCATGCCAAGGTAGCCCCCCAAATGAAAGTTCACCTGCAAAAGATACATATGTTGCAGCCAACAACGAGCAATGTGCTGCGGTAGGAGGATTGCCAGAATTGACTATGCAGCCGACTAATAAACTGAACTCTCCAACTGCATACTCCATTCCTGACCTTGTGGCGACAGAACCTCAAGAGCCATTCGGAGGAATGCTAATTGAGGATGCTGGTAGTTCAAAAGACTTGAGAAATCTGTGCCCTTCTGTGGCAGATGCCATTGTGGAGGATCAGGCTCCAGAAGCTTTTGGGACTAATCCTTCCTGTTCTGGTTTGGCTCCCAAGCTCTGCGGAAATACTCTAGGCAACACAATGGCACCTTTAGCAGCTAAGAGAGAAATGAAGAGTGTGACTATAAAAGCAACATACAGAGAAGATATTATAAGATTTCGGATTCCTTTAACATGTAGTATTCtggaattaaaagaagaagttgCCAAGAGATTGAAACTAGAGTTGGGTACATTTGATATCAAGTATTTGGATGATGATAATGAATGGGTTTTAATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATATTTCCAAGGCATCAGGCAGCAACATAATTAGGCTTTTGGTTCATGACATAGCATCCAATCTTGCAAGCTCCTATGATAGCTCAGGAGAGTG 2969 0.4294 MSESEEENPELAPTSKPPEDPGCVMEFDLDLESSWPFDQNPFESNPMSPSLIAPSSEQPFSPLWAFSDVDDDKHARVSASAFSDYNRLFSCNSNSTPEGTTENDDVKKILSPLVAFPLLENPDGYYLIKERMTQALRNFKELTEQNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLTYMFPVDGENDGIVGLPGRVFQQKLPEWTPDVQYYSRKEYQRRNHAQHFNVHGTLALPVFEPSGQSCIGVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILDHPNTQICNEGRQNALAEILEILTVVCETHKLPLAQIWVPCRHRSVLAHGGGLKKSCSSFDGSCMGRVCMSTSDVAFYIIDAHIWGFREACVEHHLQQGQGVAGRAYLSHNMCFCGNITHFCKTDYPLVHYALMFGITSCFAICLRSSHTENDDYILEFFLPPRIIDFYEQKTLLGSILATMKQHFQSLKIANGAELEEYGSIEIIEATNESVYSRFESIPISQSANSPPGPAISLKRGEMVPLDSSEQQIMMYFDDIKGEGTLVDSTGGNVDQVSSLETKNIKKPAERKRGKTEKSISLEVLQRHFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVHGAQGAFGLNSLNTSPLPIAVGSFPEPSNRFNQQSSLSTGPLETQIKENELDFFQLPEMNRQVGVEDQFLGRRVGSPVKVTHKKVGSPQEFSKGPNRSATRSGSSEDSANPTSHGSCQGSPPNESSPAKDTYVAANNEQCAAVGGLPELTMQPTNKLNSPTAYSIPDLVATEPQEPFGGMLIEDAGSSKDLRNLCPSVADAIVEDQAPEAFGTNPSCSGLAPKLCGNTLGNTMAPLAAKREMKSVTIKATYREDIIRFRIPLTCSILELKEEVAKRLKLELGTFDIKYLDDDNEWVLIACDADLQECMDISKASGSNIIRLLVHDIASNLASSYDSSGE 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01383 989 MobiDBLite consensus disorder prediction 741 780 - -
Bva03g01383 989 SMART PB1_new 894 976 IPR000270 GO:0005515
Bva03g01383 989 Pfam RWP-RK domain 588 636 IPR003035 -
Bva03g01383 989 MobiDBLite consensus disorder prediction 1 25 - -
Bva03g01383 989 ProSiteProfiles RWP-RK domain profile. 575 656 IPR003035 -
Bva03g01383 989 MobiDBLite consensus disorder prediction 730 780 - -
Bva03g01383 989 Gene3D - 891 975 - -
Bva03g01383 989 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 988 - -
Bva03g01383 989 PANTHER PROTEIN NLP8 3 988 IPR045012 GO:0003700
Bva03g01383 989 SUPERFAMILY CAD & PB1 domains 892 978 - -
Bva03g01383 989 Pfam PB1 domain 895 975 IPR000270 GO:0005515
Bva03g01383 989 CDD PB1_NLP 895 975 IPR034891 -
Bva03g01383 989 ProSiteProfiles PB1 domain profile. 894 976 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01383 Bva-Chr3 13241852 13246375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01383 878 989 NLP Transcription Factor Family AT1G64530 55.752 8.72e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bva03g01383 PB1 4.3e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01383 - - gmx:100786118 1459.12