Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01375 atgGGAAGCATCGAGGGGGTCGAAGCAGTGCGATTAGACGATGTGGAAGACATTGTATATGTTGCTGTGGGGAAGAATGTGGAGAAGAGCGAAAAGTTGCTACTTTGGGCAGCCAAGAATTTTGGCACAAAGAAGATATGCGTGCTTCATGTTCACCAACCCGAGAATGTAAAATCCTTGACAGACAAGAAACACTTGGGGAACGAATCAATAGACCCTGCAATCAAGGAATTCCGGGAGATTGAAAGACAAGAAGTGCATGACCTCCTAGATCAATACGTTCTCACTCTCTTCTTAGCTGggGTGCAAGCCAATAAATTGTTGGTTGAGATGGACAGTAATGAGAAAGCGATTAAAGAAGCTATTGCccaacacaaaataaaatggctTGTAATGGGAGCAACGGCAGATAAATATCTCTCAGGggCAGATAGAAAGCACCAGCATGAAAGAGAGAACACACTTCCGTTACTATTCCTCAATTCAAATATGAAAGCCAAGCAATCAGAGAAACTCAGATCAGAACCTGTTCCTAAAGCACTGAAATTAATAGATGCTAAGGACATGGAAGGAATTTTCAGAAGTTTCAGTTCCCACTGTTCAGTAAATTCAAACCCGTCCCTTAATAGAGTTATTGCAAGATCAGAGCTGACAGATTTACTATTTGATGAGGAGGAAATGGATGAAGGGGAAGAAGTCAGTAAAACAAATCATAGAATGGAACAAGTGATTACAGATGGTAGGAGCCTGAGACGAGAAGAATTTGGAGAGGCAGAGGAGAAACTGGAAGCAGAAAATAATACTATGAAGGATGCATTTGGAAGTTTGTGTGCTTTTGAGATGATCAGAAGAAAAGAACTTGAAGAACTATTGGCAAAGGAAAAGCAAGAAGtacagaaaatgaagaatcaAAGAGATGAACTTATGCATCGGTTGCAAATGgttaaagaccaaaatttagTTCTTAAGAGCCAACTTGATGATTCCCGCTCTATGGTGCCAGAGTTGGAGGAGAAGATTGTATCAGCTGTGGAACTCCTGATAAGTTTCAGGGAAAAACGAGATAAGCTAAAGATAGAGCATGAGAATGCAGTTAGGAGGGTCAAAGAGCTGAGGAAGTTTGTGAAAGCTGATACTGAGCATTTATATGGTACAGAATTTCCTACATTTTCTTTCGTAGAGATCAATGAGGCAACTAATGAATTTGACCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAAGGCATCCTTCGCAATATCCACGTTGCTATAAAGATGTTGCCCTCTTATGGCTCTCAAAGCCAATTGGAGTTCCAACGTCAGGTAGAGATTTTAAGTAGGGTACGACATCCGAACATTTTAACACTAATTGGAAGCTGTCCAGAATCAAGGTCACTTGTCTATGAGTACCTCAATAATGGCAGCCTTGCAGACCATCTTGCCCGCAAAGACAACACTCCACTTCCATGGCAAATTCGAATATCCATTGTCGCTGACTTATGCTCTGCTCTAATCTTCCTTCAGTACAGTGAGCCTTGTATAATCCATGGGAATTTGAAACCCAGTAAGGTTATCCTTGATTCTAACTTTGTTGCCAAACTTGGCGACTTAGGCTTTTCTCATTTGGTCCCAAAAAGTGAAGATTCAGCTAACAACACCACAATATGTAAGAATAATGCAAATGAGAGTTTGGTTTATTTGGATCCAGAATATCTTGCAACTGGGAAGCTTACACCAGAATCCGATGTGTACTCATTCGGAATCATATTGTTGCAACTTCTGACTTGCAGACCACTTTTGGGGTTAGTGAGGGATGTCAAATGTGccttggaaaaggaaaatcttaCAGCATTACTGGACTTTTCAGCTGGGGAATGGCCACTTGGTCTAACCAAACAGTTGGCATATTTGGCATTGAGATGTTGCGAAAAGAGTTGGTTGGATCTGCCCGACCTGGTTTCAGAAATCTGGAGTGTTCTAGAACCCATAAAAACTTCATGCATCAAGATGCCACCATATTTGACTTCTAAGAAGCTACATCGTGCTCCTTCCCATTTTGTGTGCCCCATTTTCCAGGAAGTTATGAAAGATCCATACATAGCTGCAGATGGGTTTACATATGAAGCAGATGCAATCGGAGGGTGGCTGGATAGTGGTCACAATACTTCTCCCATGACAAACCTTAAGCTTGAACACTTGGATCTGGTGCCCAATTATGCTCTACATAATGCAATTCAGGAGTGGCAGCAACTTCAGTG 2270 0.4022 MGSIEGVEAVRLDDVEDIVYVAVGKNVEKSEKLLLWAAKNFGTKKICVLHVHQPENVKSLTDKKHLGNESIDPAIKEFREIERQEVHDLLDQYVLTLFLAGVQANKLLVEMDSNEKAIKEAIAQHKIKWLVMGATADKYLSGADRKHQHERENTLPLLFLNSNMKAKQSEKLRSEPVPKALKLIDAKDMEGIFRSFSSHCSVNSNPSLNRVIARSELTDLLFDEEEMDEGEEVSKTNHRMEQVITDGRSLRREEFGEAEEKLEAENNTMKDAFGSLCAFEMIRRKELEELLAKEKQEVQKMKNQRDELMHRLQMVKDQNLVLKSQLDDSRSMVPELEEKIVSAVELLISFREKRDKLKIEHENAVRRVKELRKFVKADTEHLYGTEFPTFSFVEINEATNEFDPSWKIGEGRYGSVYKGILRNIHVAIKMLPSYGSQSQLEFQRQVEILSRVRHPNILTLIGSCPESRSLVYEYLNNGSLADHLARKDNTPLPWQIRISIVADLCSALIFLQYSEPCIIHGNLKPSKVILDSNFVAKLGDLGFSHLVPKSEDSANNTTICKNNANESLVYLDPEYLATGKLTPESDVYSFGIILLQLLTCRPLLGLVRDVKCALEKENLTALLDFSAGEWPLGLTKQLAYLALRCCEKSWLDLPDLVSEIWSVLEPIKTSCIKMPPYLTSKKLHRAPSHFVCPIFQEVMKDPYIAADGFTYEADAIGGWLDSGHNTSPMTNLKLEHLDLVPNYALHNAIQEWQQLQ 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01375 756 Pfam U-box domain 686 753 IPR003613 GO:0004842|GO:0016567
Bva03g01375 756 Gene3D Phosphorylase Kinase; domain 1 373 474 - -
Bva03g01375 756 Pfam Protein tyrosine and serine/threonine kinase 407 599 IPR001245 GO:0004672|GO:0006468
Bva03g01375 756 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 136 - -
Bva03g01375 756 SUPERFAMILY RING/U-box 684 753 - -
Bva03g01375 756 SUPERFAMILY Protein kinase-like (PK-like) 381 664 IPR011009 -
Bva03g01375 756 SMART Ubox_2 689 752 IPR003613 GO:0004842|GO:0016567
Bva03g01375 756 Gene3D Transferase(Phosphotransferase) domain 1 475 672 - -
Bva03g01375 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 756 IPR013083 -
Bva03g01375 756 ProSiteProfiles Protein kinase domain profile. 402 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g01375 756 PANTHER OS02G0152300 PROTEIN 144 755 - -
Bva03g01375 756 PANTHER OS02G0152300 PROTEIN 14 141 - -
Bva03g01375 756 CDD RING-Ubox_WDSUB1_like 690 731 - -
Bva03g01375 756 Gene3D HUPs 20 153 IPR014729 -
Bva03g01375 756 Coils Coil 277 318 - -
Bva03g01375 756 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 14 141 - -
Bva03g01375 756 CDD STK_N 18 147 - -
Bva03g01375 756 Coils Coil 104 124 - -
Bva03g01375 756 ProSiteProfiles U-box domain profile. 685 756 IPR003613 GO:0004842|GO:0016567
Bva03g01375 756 ProSitePatterns Protein kinases ATP-binding region signature. 408 429 IPR017441 GO:0005524
Bva03g01375 756 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 144 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01375 Bva-Chr3 13189457 13189657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01375 31 753 U-box Gene Family AT3G49060 42.513 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Bva03g01375 PK_Tyr_Ser-Thr 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01375 - - aprc:113871315 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01375 03 13189457 13189657 Bva03g01375 03 13189457 13189657 ECH