Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01374 ATGCCAGTTGCAAAACTTAAGGCCTCTAGCCCTCCAGATGTCATGAAAATAGAGGACGGGAATGATTCTATAGATACTAAAAGCAGACAAGCAATTGGAAAAgaatcctttctttctttctctagaGCTGGTGACAGCCCTGCACAGTGGATTCAATTACTGCATGCTTTAGATCAGCAGCAAGAATTCTCAGGTTGGCCTTTGCCCTCTCCTTTGAAGGTTCAGTTGCAGAAGTGTGACAAGTGTTCCCGAGAATTTTGCTCCCCCATTAACTATAGACGACACTTACGAGTACACCATCGGTTGAAAAAGCTTGATAAGGATTCTACTAAAAATAGGGATCTGTTAGGAGCTTATTGGGATAAGCTCTCTATAGAAGAGGCAAAAGACGTTGTATCGTTCAAGGATGTCATGCTAGAGGATGTACTGGGgccaacaattttaaaaacattgaCATCCCATATTCGAAAACCTGGATTTTCATCACTTCCACAGTATTATCTGAAGGCTGGTTCTGCTCTTTCGGATATTATTCAAGCTAGAATTTCCAGGGTTGTATCTTCCCAGGAGTTGTTCAGCATCCTTGATGATGCCAgtgaaaaaacatttttgtgTGGGACAGCAGTGTCaatgcaaaaatatatttttgatggAGAGGCTGGAAAAATTGGTCTTGAGCCAAAAAATATAGTTGCTTGTACAAGTTTCTTGCTGGAACAGaaattgATCAAGGCATGGCTAGCTGACAAGGATGCCGAAGCATTGAGGTGCCAGAAGTTGCTGGTGGAGGAGGAAGAAGCTGCTCAGAGAAGGCAAGCTGAGATTTTGGAAAGGAGACGCCAGAAAAAGCTTAGACAAAAAGAACAGAAGGTAAGAGAACAAAGACTCGAGGAAGATGCAGAATTTAGAGAGAATATCAGCAGCAGTGTAGAGACTGTAACACCAGCTGGAGTATCTTCAGATGCATGTAACAATGAAGCACATAATACGCATGCGTTTGCAGATCATATTCTCTCTACTGTTGCATGCTTCCCACACATTAATGGTGGTGTTGATGGGGAATCACAGCCAAGTTATGAATGTGAATTTACTGACCCAAGTGCTGATCATAACATTGAGCGACAGACTGCACAAGGGCATAACCGTCGACGCATGGCCACTTCTCGACGGCAAGCGCTGCCAAAATCACAATGGGCTGTAGCCAACGGTTTCCAGGCAAGCCAGAATCAAAAGCTTGGAGTCACTCAGAAGCATGGAACTCACCGTGATCACAGGGCAGCTCCAATAGTTAATGGTAATAAAGTATGGAGCCGAAAGCCTAAACCAGAAATTGATGGGGTGATTTTGAAAGCCGGACCACAGGAAGAACCTGACCAAGTCAAGAGTCATCAAGTTTTGATTGGGTCTATATCTGTTACTCTTGGCAATTGCAGCCAATCTGAGGGTAATCTGATTGCATCTTGCGAGGACTGTATGGTAGACAATCTGGCCAATCAGAACGGTGTTCAGGAAAGGCCAGTTAAACATGATTCCTTACAGAATGGCAACAATCGGTTTAAAGTTAAGCTTTGGAGGCCGATTAGCCAACATGGGACGAAGGATCCAATTCCAGTTCAAAATAATGATAGAGAAGCCGATATGGATGCAGTTGATGGAAAGGAAGATGATCAAAACATGTCGGATCAAAGTTCTTTAAGGCTGTGTGGTGCAGATAATAGTGATAGTGGGTTTGGAAACAATTCCTATCGTCTGGACGATAATTGGAGTCCAGGAAGCTTGCGGTTGTCTAGCCATGCTGCAAAAGCCTTTCTTGCAGGAAGATGGAAAGAAGCTATATCATCAAACCATGTGAAATTGGTTCTTTCACCGGACCCCGCACCTCCCGCGTCCCCAGAGAGACCGTATTCTGAAGCAGCATGTCAATCTTCAAATGTTGACAGATACAGCAGCATTCTTACGAGTACTGAGAACCAGTTGGTTAATGTGGGCTTCGAGTCTGCAAATGCCGCGGGAGCTGCTAAGTTCAAACTCAGAACGAACCCTGAAAAGGGTATCAAGATAAAGTACATTCCCAAACAAAAGACAGCTACCTA 2093 0.4247 MPVAKLKASSPPDVMKIEDGNDSIDTKSRQAIGKESFLSFSRAGDSPAQWIQLLHALDQQQGWPLPSPLKVQLQKCDKCSREFCSPINYRRHLRVHHRLKKLDKDSTKNRDLLGAYWDKLSIEEAKDVVSFKDVMLEDVLGPTILKTLTSHIRKPGFSSLPQYYLKAGSALSDIIQARISRVVSSQELFSILDDASEKTFLCGTAVSMQKYIFDGEAGKIGLEPKNIVACTSFLLEQKLIKAWLADKDAEALRCQKLLVEEEEAAQRRQAEILERRRQKKLRQKEQKVREQRLEEDAEFRENISSSVETVTPAGVSSDACNNEAHNTHAFADHILSTVACFPHINGGVDGESQPSYECEFTDPSADHNIERQTAQGHNRRRMATSRRQALPKSQWAVANGFQASQNQKLGVTQKHGTHRDHRAAPIVNGNKVWSRKPKPEIDGVILKAGPQEEPDQVKSHQVLIGSISVTLGNCSQSEGNLIASCEDCMVDNLANQNGVQERPVKHDSLQNGNNRFKVKLWRPISQHGTKDPIPVQNNDREADMDAVDGKEDDQNMSDQSSLRLCGADNSDSGFGNNSYRLDDNWSPGSLRLSSHAAKAFLAGRWKEAISSNHVKLVLSPDPAPPASPERPYSEAACQSSNVDRYSSILTSTENQLVNVGFESANAAGAAKFKLRTNPEKGIKIKYIPKQKTAT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01374 694 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 693 - -
Bva03g01374 694 Coils Coil 270 290 - -
Bva03g01374 694 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Bva03g01374 694 ProSitePatterns Zinc finger C2H2 type domain signature. 76 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01374 Bva-Chr3 13171492 13179100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01374 18 691 C2H2 Transcription Factor Family AT4G25610 42.692 1.13e-147 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva03g01374 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01374 - - gmx:100799153 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01374 03 13171492 13179100 Bva03g01374 03 13171492 13179100 ECH