Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01317 ATGCTTGCTTACAACGCTTACCTCAAATATGCATTCTCAATTTTACTGTTTTCTCCCATTGTTGGCGTGGCAATTCATGATTGCTTCCTCATCAGTGCCTACCAAAAACCGCACCGTACTGAGAAACATCCTCGTGCCCTTTGCTATAAATGTTGTGTTGCGGCTATTGCCGCCGTAACAGCCACgcttcatcatcatcctccTTCACTCTCGCTGCTTAAACCCCCCAAAATTTTCTGTATGGTATCCAAAAACCCGAACCCGGCAGAGGGGTTCTACTTGGATCCCAGTGGGGTGGCGCTACCCGGACTCGGTCCTTTTGCCTCTGTAACCACTGCTGCCACCACGATGGCGTCCACCACCAATTCATCGGAGGACTCCGCGAAGAAGATCCGGAAACCATACACTATTACTAAGTCTAGGGAGAGCTGGACCGAACCTGAGCATGACAAGTTCCTTGAAGCTCTCCAACTATTTGACCGAGActggaaaaaaattgaagcatttGTTGGATCAAAGACAGTAATTCAGATACGCAGTCATGCACAAAAATACTTTCTAAAAGTTCAGAAGAATGGGACAAATGAGCATCTACCTCCACccagaccaaaaagaaaagctgctCATCCATATCCTCAGAAAGCTTCAAAAAATGCTCCAGTACTCTCACCTGTTTCCAGATCTTTTCAATCTTCATCTGCTTTGCTTGAAACTGGATACATCCTAAAGCCTGAGTCCTCAGGAATGCTTAAAACTCCTATTACCAACACTGCAGTGTCCTCCTGGTCAAACAATTCCTTGCAGACAGTCAATTTATTGCATGGTACAAAAGGGCCGAAAGTTAATAATTGTTGCAGTAGCAATGAAAGCACACCCAGACCATGGCCCATTGGTGAATCTACTGGTCAAGGGAATAATAGTCAGCCATTAAGAGTGCTTCCAGATTTTGCACAAGTATATAGCTTCATTGGCAGTGTGTTTGATCCATGTGCAACTGCACATCTgcagaaactaaaaaagatgGATCCTATAGATGTTGAGACGGTGCTACTGTTGATGAGAAACTTGTCTATCAATTTGTCCAGCCCGGATTTTGAGGATCATGTAAGTACTTATACCACTGACCTtcaaattgatataaatataattgtagTAAAACACTTTGCTTG 1169 0.4063 MLAYNAYLKYAFSILLFSPIVGVAIHDCFLISAYQKPHRTEKHPRALCYKCCVAAIAAVTATLHHHPPSLSLLKPPKIFCMVSKNPNPAEGFYLDPSGVALPGLGPFASVTTAATTMASTTNSSEDSAKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTNEHLPPPRPKRKAAHPYPQKASKNAPVLSPVSRSFQSSSALLETGYILKPESSGMLKTPITNTAVSSWSNNSLQTVNLLHGTKGPKVNNCCSSNESTPRPWPIGESTGQGNNSQPLRVLPDFAQVYSFIGSVFDPCATAHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDH 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01317 368 SUPERFAMILY Homeodomain-like 135 191 IPR009057 -
Bva03g01317 368 MobiDBLite consensus disorder prediction 190 224 - -
Bva03g01317 368 PANTHER PROTEIN REVEILLE 6 83 368 - -
Bva03g01317 368 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 139 188 IPR006447 GO:0003677
Bva03g01317 368 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Bva03g01317 368 Gene3D - 144 191 - -
Bva03g01317 368 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Bva03g01317 368 SMART sant 140 188 IPR001005 -
Bva03g01317 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 190 IPR017930 -
Bva03g01317 368 PANTHER SWI/SNF COMPLEX-RELATED 83 368 - -
Bva03g01317 368 CDD SANT 143 186 IPR001005 -
Bva03g01317 368 ProSiteProfiles SANT domain profile. 139 192 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01317 Bva-Chr3 12806314 12811134 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva03g01317 Myb_DNA-binding 4.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01317 - - jre:109010831 461.84