Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01303 ATGGACGATGACTGGGATCTCTATGCCATCGTTCGAAGTTGTAAATTCCTCACCTCCCCAACCTCGACCGCCACCGCTGCTGTGGAAGCTCCACCCGTCACCGCTGCTACCGCCACCGGGAATGCGTCGTCGTCTGGAAACGCTTTAGCTTGCTTGGCATCGTTAACTttcaaggaagaaaatgaccCGTTTTCTTTTCCCAATCTCGTACAACCTGCGAGTAGTGGGTTCCAAGAGCTGGACCAAATGGTGATGCCCTTTGCCCCCACCAACACCAACACCGCCACAGCCACTGCCGCCATTCCTAGTAGTTTTGGTATTAGTCCCAGATTGTCTGTTTCTGATTTTGCTGGATCCATTAATGCACAGCACCAAAAGGGCCAGCTTCATCTCCCTGCCCCTTTTCGGCCAACTAGTTATGCCTCCATCAGGCCGCGCTCTCATTTTATCCCAGAAGCCTCCACTCCTGCTCTTGAAATATTCCATCACCACCAACCCCAACATCAGATAAGTGCTTCTGCTTTGGCGCCTTTGCCAAACACACCACCACCTCAACCACCCAGATCAAGAAAAAgGAAGAGCCAGCAGAAGAAAATGGTGTGCCAGGTAACAGCTGAAAACATCTCCACCGATATGTGGGCCTGGAGGAAATACGGACAGAAACCCATCAAAGGTTCTCCTTTTCCGAGGAACTATTACAGATGCAGCAGCTCCAAAGGTTGTGCTGCCAGAAAACAAGTAGAACGGAGCACAACTGAACCCAATAAGTACGTCGTCACGTACACGGGAGACCACACTCATCCCCGACCCACCCATCGGAACTCACTCGCAGGCAGTACCCGGAGTAAGCCATCTGATTCCCCTAAGCCCGTCAGATCTGGATCACCCAGAACGCCGCCATCAAAAGCTCCACCGGAGAACGAATCACAGGTTGCCGATGACCTCATACCTGCCAATGAAACCGACCTGGACCTGGATATTGACCTGGGCTCCGATGACGACGACATTCTTATACCCAACATCACGGTCATGGCCGATGACTTCTTCTCCGACATGTATCAACTCGGCGGCGACGGTGCCAGCACCAGCAACCCTGCTGGAGGCTCGTCTCTGAATAGTCAACCCGCATA 1130 0.5186 MDDDWDLYAIVRSCKFLTSPTSTATAAVEAPPVTAATATGNASSSGNALACLASLTFKEENDPFSFPNLVQPASSGFQELDQMVMPFAPTNTNTATATAAIPSSFGISPRLSVSDFAGSINAQHQKGQLHLPAPFRPTSYASIRPRSHFIPEASTPALEIFHHHQPQHQISASALAPLPNTPPPQPPRSRKRKSQQKKMVCQVTAENISTDMWAWRKYGQKPIKGSPFPRNYYRCSSSKGCAARKQVERSTTEPNKYVVTYTGDHTHPRPTHRNSLAGSTRSKPSDSPKPVRSGSPRTPPSKAPPENESQVADDLIPANETDLDLDIDLGSDDDDILIPNITVMADDFFSDMYQLGGDGASTSNPAGGSSLNSQPA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01303 376 MobiDBLite consensus disorder prediction 356 376 - -
Bva03g01303 376 Pfam WRKY DNA -binding domain 211 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva03g01303 376 Gene3D WRKY domain 193 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva03g01303 376 SUPERFAMILY WRKY DNA-binding domain 204 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva03g01303 376 MobiDBLite consensus disorder prediction 352 376 - -
Bva03g01303 376 MobiDBLite consensus disorder prediction 272 292 - -
Bva03g01303 376 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 361 - -
Bva03g01303 376 MobiDBLite consensus disorder prediction 174 199 - -
Bva03g01303 376 MobiDBLite consensus disorder prediction 239 310 - -
Bva03g01303 376 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 361 IPR044810 GO:0003700
Bva03g01303 376 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva03g01303 376 SMART WRKY_cls 209 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01303 Bva-Chr3 12690280 12692011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01303 188 283 WRKY Transcription Factor Family AT5G52830 80.208 6.04e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva03g01303 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01303 K13425 - aprc:113866622 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01303 03 12690280 12692011 Bva04g01197 04 8169888 8171305 ECH
Bva08g01861 08 12592000 12593690 Bva03g01303 03 12690280 12692011 ECH
Bva08g00110 08 575041 575385 Bva03g01303 03 12690280 12692011 ECH
Bva03g01303 03 12690280 12692011 Bva03g01303 03 12690280 12692011 ECH