Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01301 ATGGCTTCCGATCTCGAAGAGAAAGCCAAAGGGGCCTTCATCGACGAGAACTACGAGCTCGCCGTCGAATTGCTCAGTCAAGCTATTGATCTCAACCCTAGGAGCGCCGAGCTCTTTTCCGACCGTGCCCAAGTCAACATCAAGCTCAACAACTTCACTGAGGCTGTTGCCGATGCAAACAGGGCAATTGAGTTGAATCCTAAGCTATCAAAAGCATATTATCGCAAAGGCCTTGCATGCATAAAGCTTGAGGAATATCAAACTGCTAAAACTGCTTTTGAGTCAGGTGCTTCATTGGCACCAGAAGACACAAGATTCACTAATTCGATCAAAAAATGTGATGAGCTCATAGCAGAAGAGACTGGTACCATCATCACAGAGGAAAAGATCACTCCAAAGGATACATCTGTGGATAATGTTCAGCCAGTGAATGATCCTCCACAACAGGTCATAGCTGCACCCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCTGATGCGGTGGTTGTGACTATATTTGCAAAGGGTGTCCAAAAGAACTGTGTTTCTGTTGAGTTTGGTGATCAAATACTAAGCGTTGTAATTGATGTCCCTGGTGAAGatgcatataattttcaaCCTCGCTTGTTTGGAAAGATAATACCTGCCGGAAGTAGATATGAAGTTTTGTCCaccaaaattgaaattcacCTTGCAAAAGCTGAGCCAATCCAATGGACATCTCTAGAATACAGCAAGGAAGGTGGAGTTCTACAAAGGGCTAATGTGTCCTCAGTTGCTGGTGGTCAAAGGCCAACTTATCCATCCTCAAAATCAACCAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGgagaaagaagaaaaacttgaTGGTGATGCTGCTTTGAACAAATTTTTCCGGGACATTTATCAGGACGCCGATGAAGATACCAGACGAGCAATGAGAAAGTCATTTGTTGAGTCAAATGGAACAGTGCTGTCTACGAACTGGAAAGAAGTGGGATCAAAGAAGGTTGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAAAAATGGGAGTATTA 1076 0.4201 MASDLEEKAKGAFIDENYELAVELLSQAIDLNPRSAELFSDRAQVNIKLNNFTEAVADANRAIELNPKLSKAYYRKGLACIKLEEYQTAKTAFESGASLAPEDTRFTNSIKKCDELIAEETGTIITEEKITPKDTSVDNVQPVNDPPQQVIAAPKPKYRHEFYQKPDAVVVTIFAKGVQKNCVSVEFGDQILSVVIDVPGEDAYNFQPRLFGKIIPAGSRYEVLSTKIEIHLAKAEPIQWTSLEYSKEGGVLQRANVSSVAGGQRPTYPSSKSTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFRDIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01301 358 ProSiteProfiles SGS domain profile. 267 358 IPR007699 -
Bva03g01301 358 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Bva03g01301 358 ProSiteProfiles CS domain profile. 155 244 IPR007052 -
Bva03g01301 358 SMART tpr_5 36 69 IPR019734 GO:0005515
Bva03g01301 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Bva03g01301 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Bva03g01301 358 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Bva03g01301 358 SUPERFAMILY HSP20-like chaperones 154 247 IPR008978 -
Bva03g01301 358 SUPERFAMILY TPR-like 6 113 IPR011990 GO:0005515
Bva03g01301 358 Pfam Tetratricopeptide repeat 14 75 - -
Bva03g01301 358 Gene3D - 151 253 IPR008978 -
Bva03g01301 358 PANTHER PHOSPHATASE-RELATED 1 358 - -
Bva03g01301 358 CDD p23_CS_SGT1_like 161 244 - -
Bva03g01301 358 Gene3D Tetratricopeptide repeat domain 1 138 IPR011990 GO:0005515
Bva03g01301 358 Pfam SGS domain 277 356 IPR007699 -
Bva03g01301 358 Pfam CS domain 159 234 IPR007052 -
Bva03g01301 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01301 Bva-Chr3 12673636 12678294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01301 1 86 U-box Gene Family AT3G07370 30.233 8.96e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01301 K12795 - twl:119981914 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01301 03 12673636 12678294 Bva04g01199 04 8183312 8189408 ECH
Bva03g01301 03 12673636 12678294 Bva03g01301 03 12673636 12678294 ECH