Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01292 ATGATACTATCTTCCTCCACTGCAGCTATGGCTAATTTCCCACCTTCTTCTCATAGTTTCATGTTCCAAATCCATGAAGATCATGACCACCTGCCCTCTACATCTCTCAATATTCCCCCTTCATTACTACCACCCCAACACTTCCATGGTGGTGCACCTTTCATGATGAAGCGATCCATGTCGTTTTCAGGGATTGAAAACAAGTGTGATCATCAGGAGATGCATGGAGATGATGAGTTGTCTGATGATGGATGCCAGATtggggagaagaagaagaggttgAATATGGAGCAGGTCAAAGCCCTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAGCCAGAGAGGAAAATGCAGTTGGCAAAGGCTGTGGGTCTGCAGCCAAGACAGGTCGCTATTTGGTTCCAGAATAGGAGAGCCAGGTGGAAAACAAAACAGTTGGAGAAGGAATACGAAGTGCTCAGGAAACAGTTTGAAGCACTCAAGGCAGATAATGATACCCTTCAAGCTCAGAACAAGAAACTACATGCAGAGTTGCAAGCTCTAAGAGGTAGAGATTGCTTTGAAGCTGGAACACTGCGTCTTAAGAAAGAAACTGAGGGTTCTTGGAGCAATGGAAGTACTGAGAACAGCTCAGACATTAATTTGGATCTTTCAAGAACACCAGTTATGAACAGTCCCATCTCTTCTCATCATCATCAGAATGTGAAAAGCCTTCTACCAAATTCCATGAAGCCCACAAGCATAACTCAACTCCTTCAATGCTCATCATCAAGATCAGACCTTCAAAATGAGAACTTCAACAACATGTTTCACAGTGTTGATGAGCAGCACAACTTCTGGACATGGCCTGAGCAGAACCaccattttcattg 875 0.4229 MILSSSTAAMANFPPSSHSFMFQIHEDHDHLPSTSLNIPPSLLPPQHFHGGAPFMMKRSMSFSGIENKCDHQEMHGDDELSDDGCQIGEKKKRLNMEQVKALEKSFELGNKLEPERKMQLAKAVGLQPRQVAIWFQNRRARWKTKQLEKEYEVLRKQFEALKADNDTLQAQNKKLHAELQALRGRDCFEAGTLRLKKETEGSWSNGSTENSSDINLDLSRTPVMNSPISSHHHQNVKSLLPNSMKPTSITQLLQCSSSRSDLQNENFNNMFHSVDEQHNFWTWPEQNHHFH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01292 291 SMART HOX_1 88 149 IPR001356 GO:0003677
Bva03g01292 291 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Bva03g01292 291 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Bva03g01292 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 13 291 - -
Bva03g01292 291 Coils Coil 137 185 - -
Bva03g01292 291 CDD homeodomain 90 146 IPR001356 GO:0003677
Bva03g01292 291 Gene3D - 84 153 - -
Bva03g01292 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 291 IPR045224 GO:0003700
Bva03g01292 291 Pfam Homeobox associated leucine zipper 145 184 IPR003106 GO:0006355|GO:0043565
Bva03g01292 291 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Bva03g01292 291 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Bva03g01292 291 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Bva03g01292 291 SUPERFAMILY Homeodomain-like 78 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01292 Bva-Chr3 12598990 12601298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01292 13 285 Homeobox Transcription Factor Family AT3G01220 49.827 1.51e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva03g01292 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01292 K09338 - gmx:100790803 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01292 03 12598990 12601298 Bva03g01292 03 12598990 12601298 ECH