Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01280 ATGTGTGTTTCTATGTGTGTAACCTTTATCTTTTGGACTGGACTGGAATTGGAAACAGTTTACCTTGGGGCttatgatgaagaagaatctGCAGCAAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAGCAACAACTTTCACCAATTTTCCGATATCGGATTACAAGATAGAGATGGAAATTATGCAGACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGAAGAAAGAGCAGTGGATTTTCAAGAGGAGTATCCAAATACAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCACGAATAGGGAGAGTTTTTGGGAACAAATATCTCTACCTTGGCACTTACAGCACTCAAGAGGAAGCTGCTCGTGCCTATGACATAGCAGCCATTGAATACAGAGGAATCCATGCTGTGACCAACTTTGATTTGAGTAATTACATAAGATGGTTAAAGCCATCTGCTAAAGGAAATATCCCAGAAGCAGCACATGAATCACAGATAATACCAGAAACTCCAACTGTGGCATCCCCATCTAACTATACTCCATTAGAAGACTCAACTTCCTACTTTCTCAGGAGCAATTCTTTCAATACAGAATACCTGAACTCTCCTCAAAAGCAAGATATCTTTCAAACCAGAGCCTCCCTTAATAAAAAGTCATCTTCTCCCTCTGCACTTGGCATTCTTTTACGCTCTTCGGTATTTAGAGAACTGGTTGAAAAGAATACAAATGTATCTGGAGAAGAAACTGATGTAGAAGACGTGAAAGATCCTCAGCCGCAGGTAGCCGGTGATGATGATTTGGGTGGAATTTACTATGATGGAATTGATGATATTCCATTTGTCTGTGATCCCAACATATATAGCTTAGAATTGCAAGACAACTCCACACAGAGATGGGTATG 917 0.4024 MCVSMCVTFIFWTGLELETVYLGAYDEEESAARAYDLAALKYWGATTFTNFPISDYKIEMEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSNYIRWLKPSAKGNIPEAAHESQIIPETPTVASPSNYTPLEDSTSYFLRSNSFNTEYLNSPQKQDIFQTRASLNKKSSSPSALGILLRSSVFRELVEKNTNVSGEETDVEDVKDPQPQVAGDDDLGGIYYDGIDDIPFVCDPNIYSLELQDNSTQRWV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01280 305 SUPERFAMILY DNA-binding domain 17 54 IPR016177 GO:0003677
Bva03g01280 305 Gene3D AP2/ERF domain 12 54 IPR036955 GO:0003700|GO:0006355
Bva03g01280 305 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Bva03g01280 305 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 23 287 - -
Bva03g01280 305 CDD AP2 87 148 IPR001471 GO:0003700|GO:0006355
Bva03g01280 305 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 287 - -
Bva03g01280 305 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Bva03g01280 305 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Bva03g01280 305 Pfam AP2 domain 87 138 IPR001471 GO:0003700|GO:0006355
Bva03g01280 305 SUPERFAMILY DNA-binding domain 87 148 IPR016177 GO:0003677
Bva03g01280 305 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Bva03g01280 305 SMART rav1_2 7 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01280 Bva-Chr3 12488732 12490583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01280 20 174 AP2-EREBP Transcription Factor Family AT3G54320 72.956 2.51e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva03g01280 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01280 - - jre:109021237 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01280 03 12488732 12490583 Bva03g01280 03 12488732 12490583 ECH