Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01278 ATGGCGGCAATTGGAATCAACAGAGTTGCATTGATCTTCTTGGCTACTGTTGCCATTACAATTCCATGCTTTGAGGCTGGTGTTGTCAACTATGATGACTTTCTCCTGAAACAAGAAGAGGAAGCCAGAAGAGCAGCTCTTGAGGCCTACCATCCATTCCCCTACAATGTCACTTCAGAGCTCAACTTACACGTTCACTTGGCATTGCAGGAGCATGAGAAGGAGCTGAAGGGGATGAACATTAGCACCAGGAGAGACCTGGGGTCAAAAAAGATGCCGAAAGGACCATGCACGGCTACCAATCCAATTGATCGTTGCTGGCGGTGCAACCCGAACTGGGCCGACGATCGCTTTAAATTAGTCAGCTGTGCTATGGGTTTCGGGAAAAAGACCACCGGAGGACTCGGCGGCCCGATCTACGTGGTGACCGATCCCTCCGACGATGACATGTTGAACCCTAAGCCCGGAACTCTCAGACATGCAGTGATCCAGGAAGGGCCATTGTGGATTACCTTCGAGCACAACATGGTGATCAAGCTGCAGCAGGAGTTGCTGATCACATCTCACAAGACCATTGATGGTCGTGGAGCCAATGTTCAGATCAAGGGTGGGGCTGGTCTTTCCATATTTAAGGTTCAAAACGTCATCGTTCATAACATTCGGATTAAGAGTATCAAAGCTGCAAGTGGTGGTATCATTGCCGACTCTGTCAACCACCAGGGGTTAAGGACACGGAGTGATGGAGACGCCATTTCCATCTTTACTAGCAGCAACATTTGGATTGATCACATTTCCATGTCTGATTGTGAAGATGGCCTTGTTGATATCATTGCGGGTTCTACTGGTGTCACCATCTCTAACTGCCACATGACCCATCACAATGATGTGATGTTGTTTGGTGCAAACGATCAACACACAGAGGACAAAATAATGCAGGTGACAGTGGCATTCAACCATTTTGGACAGGGATTGATTCAGAGAATGCCTAGATGCAGATTTGGTTTTGTTCATGTTGTGAACAATGACTACACTCACTGGCAGATGTATGCAATTGGTGGCAGCTCTGCCCCAACCATTCTCAGCCAAGGCAACAGATTCATTGCTCCGATGAACGATGCGGCGAAGTTGATCACACACAGAGACTATGCACCAGAATCAGTGTGGAGTAAGTGGCAATGGAGATCAGAGATGGACTTGCTGATGAATGGAGCACAATTCATTGAGTCTGGAGAACCCTTAAATGGTAACTATCCAGGGGACCGAGCCAACATTGTCGAACCCAAAGATGGACAATTTGTTACTACCATTACAAAATACTCTGGTGCACTCTCCTGCAAGGTTGGCAAGCCTTGCTA 1355 0.476 MAAIGINRVALIFLATVAITIPCFEAGVVNYDDFLLKQEEEARRAALEAYHPFPYNVTSELNLHVHLALQEHEKELKGMNISTRRDLGSKKMPKGPCTATNPIDRCWRCNPNWADDRFKLVSCAMGFGKKTTGGLGGPIYVVTDPSDDDMLNPKPGTLRHAVIQEGPLWITFEHNMVIKLQQELLITSHKTIDGRGANVQIKGGAGLSIFKVQNVIVHNIRIKSIKAASGGIIADSVNHQGLRTRSDGDAISIFTSSNIWIDHISMSDCEDGLVDIIAGSTGVTISNCHMTHHNDVMLFGANDQHTEDKIMQVTVAFNHFGQGLIQRMPRCRFGFVHVVNNDYTHWQMYAIGGSSAPTILSQGNRFIAPMNDAAKLITHRDYAPESVWSKWQWRSEMDLLMNGAQFIESGEPLNGNYPGDRANIVEPKDGQFVTTITKYSGALSCKVGKPC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01278 451 Gene3D - 100 444 IPR012334 -
Bva03g01278 451 Pfam Pectate lyase, N terminus 30 87 IPR007524 GO:0030570
Bva03g01278 451 PANTHER PECTATE LYASE 7 451 - -
Bva03g01278 451 SMART amb_all 175 372 IPR002022 -
Bva03g01278 451 PANTHER PECTATE LYASE 18-RELATED 7 451 IPR045032 GO:0030570
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Bva03g01278 451 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Bva03g01278 451 SUPERFAMILY Pectin lyase-like 101 442 IPR011050 -
Bva03g01278 451 Pfam Pectate lyase 182 366 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01278 Bva-Chr3 12483559 12485736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01278 11 451 Polysaccharide Lyase AT3G01270 52.991 9.31e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01278 K01728 - gmx:100810615 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01278 03 12483559 12485736 Bva05g00449 05 2214896 2216747 ECH
Bva03g01278 03 12483559 12485736 Bva03g01278 03 12483559 12485736 ECH
Bva03g01278 03 12483559 12485736 Bva04g01214 04 8350559 8353260 ECH
Bva08g01443 08 7564919 7567839 Bva03g01278 03 12483559 12485736 ECH
Bva11g01031 11 11916025 11921128 Bva03g01278 03 12483559 12485736 ECH